Cluster: Rep_3577_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3577
- CGC Family ID: CGCFAM_07657
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3577_c_0 | Rep_3577_c_0_22 | 21125 | 22522 | - | 2.A.66.1.32 |
| pfam | Rep_3577_c_0 | Rep_3577_c_0_23 | 22743 | 23285 | - | ECF-ribofla_trS | ECF_trnsprt |
| TC | Rep_3577_c_0 | Rep_3577_c_0_24 | 23572 | 24738 | + | 2.A.103.1.4 |
| pfam | Rep_3577_c_0 | Rep_3577_c_0_25 | 24842 | 25549 | + | ThuA |
| CAZyme | Rep_3577_c_0 | Rep_3577_c_0_26 | 25558 | 26604 | + | GH179 |
| pfam | Rep_3577_c_0 | Rep_3577_c_0_27 | 26604 | 27602 | + | GFO_IDH_MocA | GFO_IDH_MocA_C3 |
| pfam | Rep_3577_c_0 | Rep_3577_c_0_28 | 27599 | 28513 | + | AP_endonuc_2 |
| CAZyme | Rep_3577_c_0 | Rep_3577_c_0_29 | 28558 | 29712 | + | GH179 |
| pfam | Rep_3577_c_0 | Rep_3577_c_0_30 | 29759 | 30574 | + | AP_endonuc_2 |
| TC | Rep_3577_c_0 | Rep_3577_c_0_31 | 30686 | 32134 | - | 2.A.40.7.4 |
| TF | Rep_3577_c_0 | Rep_3577_c_0_32 | 32431 | 33018 | + | LexA_DNA_bind |
| pfam | Rep_3577_c_0 | Rep_3577_c_0_33 | 33029 | 33475 | + | RNase_H |
| TC | Rep_3577_c_0 | Rep_3577_c_0_34 | 33480 | 34016 | + | 2.A.88.9.1 |
Gene ID: Rep_3577_c_0_22
Type: TC
Location: 21125 - 22522 (-)
Type: TC
Location: 21125 - 22522 (-)
Gene ID: Rep_3577_c_0_23
Type: pfam
Location: 22743 - 23285 (-)
Type: pfam
Location: 22743 - 23285 (-)
Gene ID: Rep_3577_c_0_24
Type: TC
Location: 23572 - 24738 (+)
Type: TC
Location: 23572 - 24738 (+)
Gene ID: Rep_3577_c_0_25
Type: pfam
Location: 24842 - 25549 (+)
Type: pfam
Location: 24842 - 25549 (+)
Gene ID: Rep_3577_c_0_26
Type: CAZyme
Location: 25558 - 26604 (+)
Type: CAZyme
Location: 25558 - 26604 (+)
Gene ID: Rep_3577_c_0_27
Type: pfam
Location: 26604 - 27602 (+)
Type: pfam
Location: 26604 - 27602 (+)
Gene ID: Rep_3577_c_0_28
Type: pfam
Location: 27599 - 28513 (+)
Type: pfam
Location: 27599 - 28513 (+)
Gene ID: Rep_3577_c_0_29
Type: CAZyme
Location: 28558 - 29712 (+)
Type: CAZyme
Location: 28558 - 29712 (+)
Gene ID: Rep_3577_c_0_30
Type: pfam
Location: 29759 - 30574 (+)
Type: pfam
Location: 29759 - 30574 (+)
Gene ID: Rep_3577_c_0_31
Type: TC
Location: 30686 - 32134 (-)
Type: TC
Location: 30686 - 32134 (-)
Gene ID: Rep_3577_c_0_32
Type: TF
Location: 32431 - 33018 (+)
Type: TF
Location: 32431 - 33018 (+)
Gene ID: Rep_3577_c_0_33
Type: pfam
Location: 33029 - 33475 (+)
Type: pfam
Location: 33029 - 33475 (+)
Gene ID: Rep_3577_c_0_34
Type: TC
Location: 33480 - 34016 (+)
Type: TC
Location: 33480 - 34016 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UBA737
Species
UBA737 sp900547305
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3577_c_0_24 | vegetarian > vegan | 1.60519 | 0.00207 |
| Rep_3577_c_0_25 | vegetarian > vegan | 1.84938 | 0.00207 |
| Rep_3577_c_0_26 | vegetarian > vegan | 1.95143 | 0.00207 |
| Rep_3577_c_0_27 | vegetarian > vegan | 1.40010 | 0.00207 |
| Rep_3577_c_0_28 | vegetarian > vegan | 1.16033 | 0.00207 |
| Rep_3577_c_0_30 | vegetarian > vegan | 2.97794 | 0.00207 |
| Rep_3577_c_0_32 | vegetarian > vegan | 2.44723 | 0.00207 |
| Rep_3577_c_0_34 | vegetarian > vegan | 16.64093 | 0.00207 |