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Cluster: Rep_3573_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3573_c_8 Rep_3573_c_8_7 4872 5570 + 3.A.1.132.6
NULL(UNKNOWN) Rep_3573_c_8 Rep_3573_c_8_8 5564 6364 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3573_c_8 Rep_3573_c_8_9 6507 7874 + 2.A.26.1.3
NULL(UNKNOWN) Rep_3573_c_8 Rep_3573_c_8_10 7928 9661 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3573_c_8 Rep_3573_c_8_11 10084 11532 - Phage_integrase | Phage_int_SAM_3
CAZyme Rep_3573_c_8 Rep_3573_c_8_12 12008 14545 - GH106
CAZyme Rep_3573_c_8 Rep_3573_c_8_13 15060 16817 - GH2
Gene ID: Rep_3573_c_8_7
Type: TC
Location: 4872 - 5570 (+)
Gene ID: Rep_3573_c_8_8
Type:
Location: 5564 - 6364 (+)
Gene ID: Rep_3573_c_8_9
Type: TC
Location: 6507 - 7874 (+)
Gene ID: Rep_3573_c_8_10
Type:
Location: 7928 - 9661 (-)
Gene ID: Rep_3573_c_8_11
Type: pfam
Location: 10084 - 11532 (-)
Gene ID: Rep_3573_c_8_12
Type: CAZyme
Location: 12008 - 14545 (-)
Gene ID: Rep_3573_c_8_13
Type: CAZyme
Location: 15060 - 16817 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3573_c_8_13 vegetarian > vegan 1.10009 0.01054

🧭 Explore Read Mapping of CGC

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