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Cluster: Rep_3573_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3573_c_22 Rep_3573_c_22_2 1402 2310 + 3.A.1.1.23
TC Rep_3573_c_22 Rep_3573_c_22_3 2323 3192 + 3.A.1.1.39
pfam Rep_3573_c_22 Rep_3573_c_22_4 3234 5294 + NHL | Yip1
pfam Rep_3573_c_22 Rep_3573_c_22_5 5287 7848 + DUF5696
TC Rep_3573_c_22 Rep_3573_c_22_6 7853 8746 + 3.A.1.1.11
TC Rep_3573_c_22 Rep_3573_c_22_7 8762 9700 + 3.A.1.1.46
NULL(UNKNOWN) Rep_3573_c_22 Rep_3573_c_22_8 9754 11262 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) Rep_3573_c_22 Rep_3573_c_22_9 11274 14960 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3573_c_22 Rep_3573_c_22_10 14957 15721 + GH5_25
Gene ID: Rep_3573_c_22_2
Type: TC
Location: 1402 - 2310 (+)
Gene ID: Rep_3573_c_22_3
Type: TC
Location: 2323 - 3192 (+)
Gene ID: Rep_3573_c_22_4
Type: pfam
Location: 3234 - 5294 (+)
Gene ID: Rep_3573_c_22_5
Type: pfam
Location: 5287 - 7848 (+)
Gene ID: Rep_3573_c_22_6
Type: TC
Location: 7853 - 8746 (+)
Gene ID: Rep_3573_c_22_7
Type: TC
Location: 8762 - 9700 (+)
Gene ID: Rep_3573_c_22_8
Type:
Location: 9754 - 11262 (+)
Gene ID: Rep_3573_c_22_9
Type:
Location: 11274 - 14960 (+)
Gene ID: Rep_3573_c_22_10
Type: CAZyme
Location: 14957 - 15721 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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