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Cluster: Rep_356_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_356_c_2 Rep_356_c_2_41 53087 55300 + GH36
pfam Rep_356_c_2 Rep_356_c_2_42 55305 57146 + Metallophos | PQQ_2
NULL(UNKNOWN) Rep_356_c_2 Rep_356_c_2_43 57458 58390 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_356_c_2 Rep_356_c_2_44 58390 59112 + 9.B.20.1.4
TC Rep_356_c_2 Rep_356_c_2_45 59117 61315 + 2.A.37.5.2
pfam Rep_356_c_2 Rep_356_c_2_46 61356 62513 + AIRS | AIRS_C
CAZyme Rep_356_c_2 Rep_356_c_2_47 62563 63948 + GH23
pfam Rep_356_c_2 Rep_356_c_2_48 64031 64579 + DUF3332
NULL(UNKNOWN) Rep_356_c_2 Rep_356_c_2_49 64686 65141 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_356_c_2 Rep_356_c_2_50 65302 68676 - PL26
Gene ID: Rep_356_c_2_41
Type: CAZyme
Location: 53087 - 55300 (+)
Gene ID: Rep_356_c_2_42
Type: pfam
Location: 55305 - 57146 (+)
Gene ID: Rep_356_c_2_43
Type:
Location: 57458 - 58390 (+)
Gene ID: Rep_356_c_2_44
Type: TC
Location: 58390 - 59112 (+)
Gene ID: Rep_356_c_2_45
Type: TC
Location: 59117 - 61315 (+)
Gene ID: Rep_356_c_2_46
Type: pfam
Location: 61356 - 62513 (+)
Gene ID: Rep_356_c_2_47
Type: CAZyme
Location: 62563 - 63948 (+)
Gene ID: Rep_356_c_2_48
Type: pfam
Location: 64031 - 64579 (+)
Gene ID: Rep_356_c_2_49
Type:
Location: 64686 - 65141 (+)
Gene ID: Rep_356_c_2_50
Type: CAZyme
Location: 65302 - 68676 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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