Cluster: Rep_356_CGC39
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_356
- CGC Family ID: CGCFAM_01477
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_356_c_25 | Rep_356_c_25_3 | 1836 | 4637 | - | CE12 | CE12 | CE12 |
| CAZyme | Rep_356_c_25 | Rep_356_c_25_4 | 4644 | 6506 | - | PL11_1 |
| CAZyme | Rep_356_c_25 | Rep_356_c_25_5 | 6527 | 8995 | - | GH2 |
| TF | Rep_356_c_25 | Rep_356_c_25_6 | 9111 | 11948 | - | HTH_AraC | HTH_AraC |
| TC | Rep_356_c_25 | Rep_356_c_25_7 | 12178 | 15336 | + | 1.B.14.6.1 |
| pfam | Rep_356_c_25 | Rep_356_c_25_8 | 15342 | 17402 | + | SusD_RagB | SusD-like_3 |
| TC | Rep_356_c_25 | Rep_356_c_25_9 | 17438 | 20257 | + | 1.B.14.6.1 |
| pfam | Rep_356_c_25 | Rep_356_c_25_10 | 20279 | 22042 | + | SusD_RagB | SusD-like_3 |
| CAZyme | Rep_356_c_25 | Rep_356_c_25_11 | 22137 | 25076 | + | GH2 |
| CAZyme | Rep_356_c_25 | Rep_356_c_25_12 | 25171 | 27105 | + | GH43_19 | GH43_34 |
| TF | Rep_356_c_25 | Rep_356_c_25_13 | 27279 | 27875 | + | GerE |
| STP | Rep_356_c_25 | Rep_356_c_25_14 | 27899 | 28903 | + | FecR |
| TC | Rep_356_c_25 | Rep_356_c_25_15 | 29098 | 32451 | + | 1.B.14.6.1 |
| pfam | Rep_356_c_25 | Rep_356_c_25_16 | 32470 | 34416 | + | SusD_RagB | SusD-like_3 |
| pfam | Rep_356_c_25 | Rep_356_c_25_17 | 34453 | 34920 | + | DUF5018-rel |
| TC | Rep_356_c_25 | Rep_356_c_25_18 | 35492 | 38152 | + | 3.A.3.2.17 |
Gene ID: Rep_356_c_25_3
Type: CAZyme
Location: 1836 - 4637 (-)
Type: CAZyme
Location: 1836 - 4637 (-)
Gene ID: Rep_356_c_25_4
Type: CAZyme
Location: 4644 - 6506 (-)
Type: CAZyme
Location: 4644 - 6506 (-)
Gene ID: Rep_356_c_25_5
Type: CAZyme
Location: 6527 - 8995 (-)
Type: CAZyme
Location: 6527 - 8995 (-)
Gene ID: Rep_356_c_25_6
Type: TF
Location: 9111 - 11948 (-)
Type: TF
Location: 9111 - 11948 (-)
Gene ID: Rep_356_c_25_7
Type: TC
Location: 12178 - 15336 (+)
Type: TC
Location: 12178 - 15336 (+)
Gene ID: Rep_356_c_25_8
Type: pfam
Location: 15342 - 17402 (+)
Type: pfam
Location: 15342 - 17402 (+)
Gene ID: Rep_356_c_25_9
Type: TC
Location: 17438 - 20257 (+)
Type: TC
Location: 17438 - 20257 (+)
Gene ID: Rep_356_c_25_10
Type: pfam
Location: 20279 - 22042 (+)
Type: pfam
Location: 20279 - 22042 (+)
Gene ID: Rep_356_c_25_11
Type: CAZyme
Location: 22137 - 25076 (+)
Type: CAZyme
Location: 22137 - 25076 (+)
Gene ID: Rep_356_c_25_12
Type: CAZyme
Location: 25171 - 27105 (+)
Type: CAZyme
Location: 25171 - 27105 (+)
Gene ID: Rep_356_c_25_13
Type: TF
Location: 27279 - 27875 (+)
Type: TF
Location: 27279 - 27875 (+)
Gene ID: Rep_356_c_25_14
Type: STP
Location: 27899 - 28903 (+)
Type: STP
Location: 27899 - 28903 (+)
Gene ID: Rep_356_c_25_15
Type: TC
Location: 29098 - 32451 (+)
Type: TC
Location: 29098 - 32451 (+)
Gene ID: Rep_356_c_25_16
Type: pfam
Location: 32470 - 34416 (+)
Type: pfam
Location: 32470 - 34416 (+)
Gene ID: Rep_356_c_25_17
Type: pfam
Location: 34453 - 34920 (+)
Type: pfam
Location: 34453 - 34920 (+)
Gene ID: Rep_356_c_25_18
Type: TC
Location: 35492 - 38152 (+)
Type: TC
Location: 35492 - 38152 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Muribaculaceae
Genus
CAG-873
Species
CAG-873 sp009775195
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.