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Cluster: Rep_356_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_356_c_7 Rep_356_c_7_33 43808 45445 + 2.A.81.1.2
CAZyme Rep_356_c_7 Rep_356_c_7_34 45547 47952 - GH146
CAZyme Rep_356_c_7 Rep_356_c_7_35 47970 48944 - GH43_18
CAZyme Rep_356_c_7 Rep_356_c_7_36 48952 51372 - GH127
CAZyme Rep_356_c_7 Rep_356_c_7_37 51390 53783 - GH146
CAZyme Rep_356_c_7 Rep_356_c_7_38 53797 55620 - GH2
CAZyme Rep_356_c_7 Rep_356_c_7_39 55631 57157 - GH43_8
CAZyme Rep_356_c_7 Rep_356_c_7_40 57168 59240 - GH127
CAZyme Rep_356_c_7 Rep_356_c_7_41 59337 61904 - CBM57 | GH2
pfam Rep_356_c_7 Rep_356_c_7_42 62005 63648 - SusD_RagB | SusD-like_3
TC Rep_356_c_7 Rep_356_c_7_43 63665 66658 - 1.B.14.6.1
Gene ID: Rep_356_c_7_33
Type: TC
Location: 43808 - 45445 (+)
Gene ID: Rep_356_c_7_34
Type: CAZyme
Location: 45547 - 47952 (-)
Gene ID: Rep_356_c_7_35
Type: CAZyme
Location: 47970 - 48944 (-)
Gene ID: Rep_356_c_7_36
Type: CAZyme
Location: 48952 - 51372 (-)
Gene ID: Rep_356_c_7_37
Type: CAZyme
Location: 51390 - 53783 (-)
Gene ID: Rep_356_c_7_38
Type: CAZyme
Location: 53797 - 55620 (-)
Gene ID: Rep_356_c_7_39
Type: CAZyme
Location: 55631 - 57157 (-)
Gene ID: Rep_356_c_7_40
Type: CAZyme
Location: 57168 - 59240 (-)
Gene ID: Rep_356_c_7_41
Type: CAZyme
Location: 59337 - 61904 (-)
Gene ID: Rep_356_c_7_42
Type: pfam
Location: 62005 - 63648 (-)
Gene ID: Rep_356_c_7_43
Type: TC
Location: 63665 - 66658 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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