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Cluster: Rep_356_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_356_c_6 Rep_356_c_6_24 46391 48664 + GH3
pfam Rep_356_c_6 Rep_356_c_6_25 48781 49686 + PTA_PTB
pfam Rep_356_c_6 Rep_356_c_6_26 49693 50925 + Acetate_kinase
CAZyme Rep_356_c_6 Rep_356_c_6_27 50951 51904 - GT2
pfam Rep_356_c_6 Rep_356_c_6_28 51901 53349 - GHL10
TC Rep_356_c_6 Rep_356_c_6_29 53915 55123 - 2.A.1.35.1
pfam Rep_356_c_6 Rep_356_c_6_30 55436 57970 + Ribonuc_red_lgN | Ribonuc_red_lgC
pfam Rep_356_c_6 Rep_356_c_6_31 58265 58912 + PRK
TC Rep_356_c_6 Rep_356_c_6_32 58916 59833 + 1.B.42.1.2
Gene ID: Rep_356_c_6_24
Type: CAZyme
Location: 46391 - 48664 (+)
Gene ID: Rep_356_c_6_25
Type: pfam
Location: 48781 - 49686 (+)
Gene ID: Rep_356_c_6_26
Type: pfam
Location: 49693 - 50925 (+)
Gene ID: Rep_356_c_6_27
Type: CAZyme
Location: 50951 - 51904 (-)
Gene ID: Rep_356_c_6_28
Type: pfam
Location: 51901 - 53349 (-)
Gene ID: Rep_356_c_6_29
Type: TC
Location: 53915 - 55123 (-)
Gene ID: Rep_356_c_6_30
Type: pfam
Location: 55436 - 57970 (+)
Gene ID: Rep_356_c_6_31
Type: pfam
Location: 58265 - 58912 (+)
Gene ID: Rep_356_c_6_32
Type: TC
Location: 58916 - 59833 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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