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Cluster: Rep_356_CGC12

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_356_c_5 Rep_356_c_5_4 3882 6350 - 3.A.11.3.1
TC Rep_356_c_5 Rep_356_c_5_5 6352 8373 - 1.B.14.15.2
pfam Rep_356_c_5 Rep_356_c_5_6 8416 9801 - DUF4270
CAZyme Rep_356_c_5 Rep_356_c_5_7 9826 10641 - GT5
TF Rep_356_c_5 Rep_356_c_5_8 10800 11651 - HTH_AraC | HTH_AraC
CAZyme Rep_356_c_5 Rep_356_c_5_9 11701 14361 - GH39 | GH43_19
pfam Rep_356_c_5 Rep_356_c_5_10 14375 15667 - DUF362
TC Rep_356_c_5 Rep_356_c_5_11 15677 16726 - 8.A.5.1.6
STP Rep_356_c_5 Rep_356_c_5_12 17130 18098 + HTH_7
NULL(UNKNOWN) Rep_356_c_5 Rep_356_c_5_13 18239 19093 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_356_c_5 Rep_356_c_5_14 19579 22452 - GH2
Gene ID: Rep_356_c_5_4
Type: TC
Location: 3882 - 6350 (-)
Gene ID: Rep_356_c_5_5
Type: TC
Location: 6352 - 8373 (-)
Gene ID: Rep_356_c_5_6
Type: pfam
Location: 8416 - 9801 (-)
Gene ID: Rep_356_c_5_7
Type: CAZyme
Location: 9826 - 10641 (-)
Gene ID: Rep_356_c_5_8
Type: TF
Location: 10800 - 11651 (-)
Gene ID: Rep_356_c_5_9
Type: CAZyme
Location: 11701 - 14361 (-)
Gene ID: Rep_356_c_5_10
Type: pfam
Location: 14375 - 15667 (-)
Gene ID: Rep_356_c_5_11
Type: TC
Location: 15677 - 16726 (-)
Gene ID: Rep_356_c_5_12
Type: STP
Location: 17130 - 18098 (+)
Gene ID: Rep_356_c_5_13
Type:
Location: 18239 - 19093 (-)
Gene ID: Rep_356_c_5_14
Type: CAZyme
Location: 19579 - 22452 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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