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Cluster: Rep_356_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_356_c_0 Rep_356_c_0_4 4844 7369 + 3.A.9.1.2
TC Rep_356_c_0 Rep_356_c_0_5 7487 8521 + 9.B.114.1.1
pfam Rep_356_c_0 Rep_356_c_0_6 8605 10479 - Thioredoxin_8
TC Rep_356_c_0 Rep_356_c_0_7 10563 11360 - 3.D.10.1.5
TC Rep_356_c_0 Rep_356_c_0_8 11376 13409 - 3.D.10.1.5
TC Rep_356_c_0 Rep_356_c_0_9 13425 14477 - 3.D.10.1.2
pfam Rep_356_c_0 Rep_356_c_0_10 14679 15725 + ADP_ribosyl_GH
NULL(UNKNOWN) Rep_356_c_0 Rep_356_c_0_11 15781 16839 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_356_c_0 Rep_356_c_0_12 16896 18383 + GH136
CAZyme Rep_356_c_0 Rep_356_c_0_13 18386 20788 + GH95
CAZyme Rep_356_c_0 Rep_356_c_0_14 20799 22298 + GH30_2
Gene ID: Rep_356_c_0_4
Type: TC
Location: 4844 - 7369 (+)
Gene ID: Rep_356_c_0_5
Type: TC
Location: 7487 - 8521 (+)
Gene ID: Rep_356_c_0_6
Type: pfam
Location: 8605 - 10479 (-)
Gene ID: Rep_356_c_0_7
Type: TC
Location: 10563 - 11360 (-)
Gene ID: Rep_356_c_0_8
Type: TC
Location: 11376 - 13409 (-)
Gene ID: Rep_356_c_0_9
Type: TC
Location: 13425 - 14477 (-)
Gene ID: Rep_356_c_0_10
Type: pfam
Location: 14679 - 15725 (+)
Gene ID: Rep_356_c_0_11
Type:
Location: 15781 - 16839 (+)
Gene ID: Rep_356_c_0_12
Type: CAZyme
Location: 16896 - 18383 (+)
Gene ID: Rep_356_c_0_13
Type: CAZyme
Location: 18386 - 20788 (+)
Gene ID: Rep_356_c_0_14
Type: CAZyme
Location: 20799 - 22298 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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