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Cluster: Rep_3569_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3569_c_0 Rep_3569_c_0_10 7931 9394 - 2.A.66.2.23
CAZyme Rep_3569_c_0 Rep_3569_c_0_11 9384 10382 - GT2
CAZyme Rep_3569_c_0 Rep_3569_c_0_12 10384 11370 - GT2
NULL(UNKNOWN) Rep_3569_c_0 Rep_3569_c_0_13 11392 11592 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3569_c_0 Rep_3569_c_0_14 11798 12115 - Acyl_transf_3
CAZyme Rep_3569_c_0 Rep_3569_c_0_15 12117 13289 - GT4
pfam Rep_3569_c_0 Rep_3569_c_0_16 13291 14394 - PS_pyruv_trans
CAZyme Rep_3569_c_0 Rep_3569_c_0_17 14391 15590 - GT4
pfam Rep_3569_c_0 Rep_3569_c_0_18 15611 16297 - Acyl_transf_3
NULL(UNKNOWN) Rep_3569_c_0 Rep_3569_c_0_19 16495 16629 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3569_c_0 Rep_3569_c_0_20 16640 17371 - GT32
CAZyme Rep_3569_c_0 Rep_3569_c_0_21 17389 18444 - GT2
CAZyme Rep_3569_c_0 Rep_3569_c_0_22 18458 19501 - GT2
CAZyme Rep_3569_c_0 Rep_3569_c_0_23 19556 20440 - GT2
pfam Rep_3569_c_0 Rep_3569_c_0_24 20443 20994 - Hexapep | Hexapep_2 | Hexapep_2
CAZyme Rep_3569_c_0 Rep_3569_c_0_25 20996 22108 - GT4
pfam Rep_3569_c_0 Rep_3569_c_0_26 22142 23272 - EpsG
CAZyme Rep_3569_c_0 Rep_3569_c_0_27 23287 24318 - GT4
pfam Rep_3569_c_0 Rep_3569_c_0_28 24483 25460 - ATP-grasp_3 | Dala_Dala_lig_C | ATPgrasp_Ter | PylC-like_N
TC Rep_3569_c_0 Rep_3569_c_0_29 25689 26378 - 9.B.18.1.2
STP Rep_3569_c_0 Rep_3569_c_0_30 26391 27572 - Aminotran_1_2
pfam Rep_3569_c_0 Rep_3569_c_0_31 28029 29741 + Resolvase | Recombinase | Zn_ribbon_recom
TC Rep_3569_c_0 Rep_3569_c_0_32 30158 30922 + 3.A.1.17.5
TC Rep_3569_c_0 Rep_3569_c_0_33 30926 31738 + 3.A.1.17.8
Gene ID: Rep_3569_c_0_10
Type: TC
Location: 7931 - 9394 (-)
Gene ID: Rep_3569_c_0_11
Type: CAZyme
Location: 9384 - 10382 (-)
Gene ID: Rep_3569_c_0_12
Type: CAZyme
Location: 10384 - 11370 (-)
Gene ID: Rep_3569_c_0_13
Type:
Location: 11392 - 11592 (-)
Gene ID: Rep_3569_c_0_14
Type: pfam
Location: 11798 - 12115 (-)
Gene ID: Rep_3569_c_0_15
Type: CAZyme
Location: 12117 - 13289 (-)
Gene ID: Rep_3569_c_0_16
Type: pfam
Location: 13291 - 14394 (-)
Gene ID: Rep_3569_c_0_17
Type: CAZyme
Location: 14391 - 15590 (-)
Gene ID: Rep_3569_c_0_18
Type: pfam
Location: 15611 - 16297 (-)
Gene ID: Rep_3569_c_0_19
Type:
Location: 16495 - 16629 (-)
Gene ID: Rep_3569_c_0_20
Type: CAZyme
Location: 16640 - 17371 (-)
Gene ID: Rep_3569_c_0_21
Type: CAZyme
Location: 17389 - 18444 (-)
Gene ID: Rep_3569_c_0_22
Type: CAZyme
Location: 18458 - 19501 (-)
Gene ID: Rep_3569_c_0_23
Type: CAZyme
Location: 19556 - 20440 (-)
Gene ID: Rep_3569_c_0_24
Type: pfam
Location: 20443 - 20994 (-)
Gene ID: Rep_3569_c_0_25
Type: CAZyme
Location: 20996 - 22108 (-)
Gene ID: Rep_3569_c_0_26
Type: pfam
Location: 22142 - 23272 (-)
Gene ID: Rep_3569_c_0_27
Type: CAZyme
Location: 23287 - 24318 (-)
Gene ID: Rep_3569_c_0_28
Type: pfam
Location: 24483 - 25460 (-)
Gene ID: Rep_3569_c_0_29
Type: TC
Location: 25689 - 26378 (-)
Gene ID: Rep_3569_c_0_30
Type: STP
Location: 26391 - 27572 (-)
Gene ID: Rep_3569_c_0_31
Type: pfam
Location: 28029 - 29741 (+)
Gene ID: Rep_3569_c_0_32
Type: TC
Location: 30158 - 30922 (+)
Gene ID: Rep_3569_c_0_33
Type: TC
Location: 30926 - 31738 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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