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Cluster: Rep_3563_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3563_c_23 Rep_3563_c_23_33 30952 31962 + GH130_9
TC Rep_3563_c_23 Rep_3563_c_23_34 32022 32645 + 1.A.16.5.2
TC Rep_3563_c_23 Rep_3563_c_23_35 32914 33981 + 3.A.1.2.3
TC Rep_3563_c_23 Rep_3563_c_23_36 34067 35611 + 3.A.1.2.3
TC Rep_3563_c_23 Rep_3563_c_23_37 35628 36713 + 3.A.1.2.3
pfam Rep_3563_c_23 Rep_3563_c_23_38 36742 37107 + Flg_new
TF Rep_3563_c_23 Rep_3563_c_23_39 37253 38848 + HTH_AraC
TC Rep_3563_c_23 Rep_3563_c_23_40 38848 40590 + 8.A.59.2.1
STP Rep_3563_c_23 Rep_3563_c_23_41 40580 41542 + Peripla_BP_1
TC Rep_3563_c_23 Rep_3563_c_23_42 41558 42547 + 8.A.5.1.6
Gene ID: Rep_3563_c_23_33
Type: CAZyme
Location: 30952 - 31962 (+)
Gene ID: Rep_3563_c_23_34
Type: TC
Location: 32022 - 32645 (+)
Gene ID: Rep_3563_c_23_35
Type: TC
Location: 32914 - 33981 (+)
Gene ID: Rep_3563_c_23_36
Type: TC
Location: 34067 - 35611 (+)
Gene ID: Rep_3563_c_23_37
Type: TC
Location: 35628 - 36713 (+)
Gene ID: Rep_3563_c_23_38
Type: pfam
Location: 36742 - 37107 (+)
Gene ID: Rep_3563_c_23_39
Type: TF
Location: 37253 - 38848 (+)
Gene ID: Rep_3563_c_23_40
Type: TC
Location: 38848 - 40590 (+)
Gene ID: Rep_3563_c_23_41
Type: STP
Location: 40580 - 41542 (+)
Gene ID: Rep_3563_c_23_42
Type: TC
Location: 41558 - 42547 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Acutalibacteraceae
→
Genus
UBA737
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3563_c_23_35 vegetarian > omnivore 2.36060 0.04596

🧭 Explore Read Mapping of CGC

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