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Cluster: Rep_3562_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3562_c_2 Rep_3562_c_2_11 9444 11105 - 3.A.1.5.22
TC Rep_3562_c_2 Rep_3562_c_2_12 11181 12221 - 3.A.1.5.20
TC Rep_3562_c_2 Rep_3562_c_2_13 12221 13216 - 3.A.1.5.2
TC Rep_3562_c_2 Rep_3562_c_2_14 13230 14270 - 3.A.1.5.19
TC Rep_3562_c_2 Rep_3562_c_2_15 14288 15205 - 3.A.1.5.2
peptidase Rep_3562_c_2 Rep_3562_c_2_16 15373 16440 - M24.008
TF Rep_3562_c_2 Rep_3562_c_2_17 16433 17248 - HTH_AraC | HTH_AraC
CAZyme Rep_3562_c_2 Rep_3562_c_2_18 17356 18561 + GH27
CAZyme Rep_3562_c_2 Rep_3562_c_2_19 18583 19800 + GH27
NULL(UNKNOWN) Rep_3562_c_2 Rep_3562_c_2_20 19800 20003 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3562_c_2 Rep_3562_c_2_21 20380 21714 + 2.A.66.1.33
TC Rep_3562_c_2 Rep_3562_c_2_22 21745 23340 - 3.A.1.147.6
TC Rep_3562_c_2 Rep_3562_c_2_23 23333 24046 - 3.A.1.147.6
pfam Rep_3562_c_2 Rep_3562_c_2_24 24059 26431 - Dockerin_1 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5
pfam Rep_3562_c_2 Rep_3562_c_2_25 26436 27176 - DNA_alkylation
TC Rep_3562_c_2 Rep_3562_c_2_26 27180 27965 - 2.A.5.5.2
Gene ID: Rep_3562_c_2_11
Type: TC
Location: 9444 - 11105 (-)
Gene ID: Rep_3562_c_2_12
Type: TC
Location: 11181 - 12221 (-)
Gene ID: Rep_3562_c_2_13
Type: TC
Location: 12221 - 13216 (-)
Gene ID: Rep_3562_c_2_14
Type: TC
Location: 13230 - 14270 (-)
Gene ID: Rep_3562_c_2_15
Type: TC
Location: 14288 - 15205 (-)
Gene ID: Rep_3562_c_2_16
Type: peptidase
Location: 15373 - 16440 (-)
Gene ID: Rep_3562_c_2_17
Type: TF
Location: 16433 - 17248 (-)
Gene ID: Rep_3562_c_2_18
Type: CAZyme
Location: 17356 - 18561 (+)
Gene ID: Rep_3562_c_2_19
Type: CAZyme
Location: 18583 - 19800 (+)
Gene ID: Rep_3562_c_2_20
Type:
Location: 19800 - 20003 (+)
Gene ID: Rep_3562_c_2_21
Type: TC
Location: 20380 - 21714 (+)
Gene ID: Rep_3562_c_2_22
Type: TC
Location: 21745 - 23340 (-)
Gene ID: Rep_3562_c_2_23
Type: TC
Location: 23333 - 24046 (-)
Gene ID: Rep_3562_c_2_24
Type: pfam
Location: 24059 - 26431 (-)
Gene ID: Rep_3562_c_2_25
Type: pfam
Location: 26436 - 27176 (-)
Gene ID: Rep_3562_c_2_26
Type: TC
Location: 27180 - 27965 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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