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Cluster: Rep_3562_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3562_c_1 Rep_3562_c_1_84 90096 96140 + CE2
CAZyme Rep_3562_c_1 Rep_3562_c_1_85 96242 100339 + CE2
pfam Rep_3562_c_1 Rep_3562_c_1_86 100373 101317 - PseudoU_synth_2 | S4
TF Rep_3562_c_1 Rep_3562_c_1_87 101349 102188 - HTH_AraC | HTH_AraC
CAZyme Rep_3562_c_1 Rep_3562_c_1_88 102327 103544 + GH109
TC Rep_3562_c_1 Rep_3562_c_1_89 103618 104880 + 2.A.37.2.2
Gene ID: Rep_3562_c_1_84
Type: CAZyme
Location: 90096 - 96140 (+)
Gene ID: Rep_3562_c_1_85
Type: CAZyme
Location: 96242 - 100339 (+)
Gene ID: Rep_3562_c_1_86
Type: pfam
Location: 100373 - 101317 (-)
Gene ID: Rep_3562_c_1_87
Type: TF
Location: 101349 - 102188 (-)
Gene ID: Rep_3562_c_1_88
Type: CAZyme
Location: 102327 - 103544 (+)
Gene ID: Rep_3562_c_1_89
Type: TC
Location: 103618 - 104880 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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