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Cluster: Rep_3562_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3562_c_1 Rep_3562_c_1_1 263 1612 + 9.A.40.2.1
pfam Rep_3562_c_1 Rep_3562_c_1_2 1718 2863 + Fe-ADH | Fe-ADH_2 | ADH_Fe_C
TC Rep_3562_c_1 Rep_3562_c_1_3 2964 3614 + 1.A.62.2.1
CAZyme Rep_3562_c_1 Rep_3562_c_1_4 3628 5058 - GH77
CAZyme Rep_3562_c_1 Rep_3562_c_1_5 5216 7087 + CBM48 | GH13_9
pfam Rep_3562_c_1 Rep_3562_c_1_6 7103 8293 + NTP_transferase | Hexapep_GlmU
pfam Rep_3562_c_1 Rep_3562_c_1_7 8307 9419 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_3562_c_1 Rep_3562_c_1_8 9416 10846 + GT5
CAZyme Rep_3562_c_1 Rep_3562_c_1_9 10863 13271 + GT35
CAZyme Rep_3562_c_1 Rep_3562_c_1_10 13273 15117 + GH13_39
Gene ID: Rep_3562_c_1_1
Type: TC
Location: 263 - 1612 (+)
Gene ID: Rep_3562_c_1_2
Type: pfam
Location: 1718 - 2863 (+)
Gene ID: Rep_3562_c_1_3
Type: TC
Location: 2964 - 3614 (+)
Gene ID: Rep_3562_c_1_4
Type: CAZyme
Location: 3628 - 5058 (-)
Gene ID: Rep_3562_c_1_5
Type: CAZyme
Location: 5216 - 7087 (+)
Gene ID: Rep_3562_c_1_6
Type: pfam
Location: 7103 - 8293 (+)
Gene ID: Rep_3562_c_1_7
Type: pfam
Location: 8307 - 9419 (+)
Gene ID: Rep_3562_c_1_8
Type: CAZyme
Location: 9416 - 10846 (+)
Gene ID: Rep_3562_c_1_9
Type: CAZyme
Location: 10863 - 13271 (+)
Gene ID: Rep_3562_c_1_10
Type: CAZyme
Location: 13273 - 15117 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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