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Cluster: Rep_3562_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3562_c_0 Rep_3562_c_0_322 351114 351824 - GH173
NULL(UNKNOWN) Rep_3562_c_0 Rep_3562_c_0_323 351842 352321 - NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_3562_c_0 Rep_3562_c_0_324 352487 352981 - VanZ
TC Rep_3562_c_0 Rep_3562_c_0_325 352994 354145 - 9.B.174.1.2
TC Rep_3562_c_0 Rep_3562_c_0_326 354187 355329 - 1.A.34.1.2
STP Rep_3562_c_0 Rep_3562_c_0_327 355338 356525 - Peptidase_M23
pfam Rep_3562_c_0 Rep_3562_c_0_328 356515 357504 - FtsX | FtsX_ECD
TC Rep_3562_c_0 Rep_3562_c_0_329 357497 358264 - 3.A.1.140.1
Gene ID: Rep_3562_c_0_322
Type: CAZyme
Location: 351114 - 351824 (-)
Gene ID: Rep_3562_c_0_323
Type:
Location: 351842 - 352321 (-)
Gene ID: Rep_3562_c_0_324
Type: pfam
Location: 352487 - 352981 (-)
Gene ID: Rep_3562_c_0_325
Type: TC
Location: 352994 - 354145 (-)
Gene ID: Rep_3562_c_0_326
Type: TC
Location: 354187 - 355329 (-)
Gene ID: Rep_3562_c_0_327
Type: STP
Location: 355338 - 356525 (-)
Gene ID: Rep_3562_c_0_328
Type: pfam
Location: 356515 - 357504 (-)
Gene ID: Rep_3562_c_0_329
Type: TC
Location: 357497 - 358264 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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