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Cluster: Rep_3557_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3557_c_2 Rep_3557_c_2_61 60243 63344 - GH36
STP Rep_3557_c_2 Rep_3557_c_2_62 63602 64993 - HD
TC Rep_3557_c_2 Rep_3557_c_2_63 65257 67944 + 3.A.1.122.14
TC Rep_3557_c_2 Rep_3557_c_2_64 68147 70024 - 2.A.35.2.1
CAZyme Rep_3557_c_2 Rep_3557_c_2_65 70592 72847 + CE2
pfam Rep_3557_c_2 Rep_3557_c_2_66 73207 74547 + PGI
NULL(UNKNOWN) Rep_3557_c_2 Rep_3557_c_2_67 74577 74993 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3557_c_2 Rep_3557_c_2_68 75289 76044 - 9.B.114.1.1
pfam Rep_3557_c_2 Rep_3557_c_2_69 76131 76502 - Ribosomal_L12 | Ribosomal_L12_N
pfam Rep_3557_c_2 Rep_3557_c_2_70 76557 77072 - Ribosomal_L10
TC Rep_3557_c_2 Rep_3557_c_2_71 77480 79036 - 2.A.21.2.3
Gene ID: Rep_3557_c_2_61
Type: CAZyme
Location: 60243 - 63344 (-)
Gene ID: Rep_3557_c_2_62
Type: STP
Location: 63602 - 64993 (-)
Gene ID: Rep_3557_c_2_63
Type: TC
Location: 65257 - 67944 (+)
Gene ID: Rep_3557_c_2_64
Type: TC
Location: 68147 - 70024 (-)
Gene ID: Rep_3557_c_2_65
Type: CAZyme
Location: 70592 - 72847 (+)
Gene ID: Rep_3557_c_2_66
Type: pfam
Location: 73207 - 74547 (+)
Gene ID: Rep_3557_c_2_67
Type:
Location: 74577 - 74993 (+)
Gene ID: Rep_3557_c_2_68
Type: TC
Location: 75289 - 76044 (-)
Gene ID: Rep_3557_c_2_69
Type: pfam
Location: 76131 - 76502 (-)
Gene ID: Rep_3557_c_2_70
Type: pfam
Location: 76557 - 77072 (-)
Gene ID: Rep_3557_c_2_71
Type: TC
Location: 77480 - 79036 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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