Cluster: Rep_3557_CGC4
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3557
- CGC Family ID: CGCFAM_04202
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3557_c_0 | Rep_3557_c_0_109 | 125115 | 127025 | + | CBM48 | GH13_9 |
| pfam | Rep_3557_c_0 | Rep_3557_c_0_110 | 127188 | 128411 | + | NTP_transferase | Hexapep_GlmU |
| pfam | Rep_3557_c_0 | Rep_3557_c_0_111 | 128404 | 129516 | + | NTP_transferase | Hexapep_GlmU |
| CAZyme | Rep_3557_c_0 | Rep_3557_c_0_112 | 129601 | 131028 | + | GT5 |
| NULL(UNKNOWN) | Rep_3557_c_0 | Rep_3557_c_0_113 | 131282 | 131455 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3557_c_0 | Rep_3557_c_0_114 | 131657 | 132148 | + | PBP_like | PBP_like_2 |
| TC | Rep_3557_c_0 | Rep_3557_c_0_115 | 132222 | 133094 | + | 3.A.1.7.1 |
| TC | Rep_3557_c_0 | Rep_3557_c_0_116 | 133163 | 134026 | + | 3.A.1.7.2 |
| TC | Rep_3557_c_0 | Rep_3557_c_0_117 | 134023 | 134769 | + | 3.A.1.7.5 |
| pfam | Rep_3557_c_0 | Rep_3557_c_0_118 | 134769 | 135422 | + | PhoU | PhoU |
| TC | Rep_3557_c_0 | Rep_3557_c_0_119 | 135586 | 136926 | - | 2.A.22.5.3 |
| pfam | Rep_3557_c_0 | Rep_3557_c_0_120 | 137288 | 139177 | - | Metallophos |
| pfam | Rep_3557_c_0 | Rep_3557_c_0_121 | 139888 | 140505 | - | ATP-synt_D |
| TC | Rep_3557_c_0 | Rep_3557_c_0_122 | 140576 | 141958 | - | 3.A.2.3.3 |
| TC | Rep_3557_c_0 | Rep_3557_c_0_123 | 141974 | 143737 | - | 3.A.2.3.1 |
Gene ID: Rep_3557_c_0_109
Type: CAZyme
Location: 125115 - 127025 (+)
Type: CAZyme
Location: 125115 - 127025 (+)
Gene ID: Rep_3557_c_0_110
Type: pfam
Location: 127188 - 128411 (+)
Type: pfam
Location: 127188 - 128411 (+)
Gene ID: Rep_3557_c_0_111
Type: pfam
Location: 128404 - 129516 (+)
Type: pfam
Location: 128404 - 129516 (+)
Gene ID: Rep_3557_c_0_112
Type: CAZyme
Location: 129601 - 131028 (+)
Type: CAZyme
Location: 129601 - 131028 (+)
Gene ID: Rep_3557_c_0_113
Type:
Location: 131282 - 131455 (+)
Type:
Location: 131282 - 131455 (+)
Gene ID: Rep_3557_c_0_114
Type: pfam
Location: 131657 - 132148 (+)
Type: pfam
Location: 131657 - 132148 (+)
Gene ID: Rep_3557_c_0_115
Type: TC
Location: 132222 - 133094 (+)
Type: TC
Location: 132222 - 133094 (+)
Gene ID: Rep_3557_c_0_116
Type: TC
Location: 133163 - 134026 (+)
Type: TC
Location: 133163 - 134026 (+)
Gene ID: Rep_3557_c_0_117
Type: TC
Location: 134023 - 134769 (+)
Type: TC
Location: 134023 - 134769 (+)
Gene ID: Rep_3557_c_0_118
Type: pfam
Location: 134769 - 135422 (+)
Type: pfam
Location: 134769 - 135422 (+)
Gene ID: Rep_3557_c_0_119
Type: TC
Location: 135586 - 136926 (-)
Type: TC
Location: 135586 - 136926 (-)
Gene ID: Rep_3557_c_0_120
Type: pfam
Location: 137288 - 139177 (-)
Type: pfam
Location: 137288 - 139177 (-)
Gene ID: Rep_3557_c_0_121
Type: pfam
Location: 139888 - 140505 (-)
Type: pfam
Location: 139888 - 140505 (-)
Gene ID: Rep_3557_c_0_122
Type: TC
Location: 140576 - 141958 (-)
Type: TC
Location: 140576 - 141958 (-)
Gene ID: Rep_3557_c_0_123
Type: TC
Location: 141974 - 143737 (-)
Type: TC
Location: 141974 - 143737 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
UMGS1484
Species
UMGS1484 sp934486455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.