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Cluster: Rep_3557_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3557_c_19 Rep_3557_c_19_7 8492 10864 + CE2
pfam Rep_3557_c_19 Rep_3557_c_19_8 11381 14452 + Dockerin_1 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5
TC Rep_3557_c_19 Rep_3557_c_19_9 14597 15910 - 3.A.1.11.1
TC Rep_3557_c_19 Rep_3557_c_19_10 15907 16740 - 3.A.1.11.8
TC Rep_3557_c_19 Rep_3557_c_19_11 16737 17567 - 3.A.1.11.8
TC Rep_3557_c_19 Rep_3557_c_19_12 17560 18726 - 3.A.1.11.8
TC Rep_3557_c_19 Rep_3557_c_19_13 18868 20313 - 2.A.38.1.1
Gene ID: Rep_3557_c_19_7
Type: CAZyme
Location: 8492 - 10864 (+)
Gene ID: Rep_3557_c_19_8
Type: pfam
Location: 11381 - 14452 (+)
Gene ID: Rep_3557_c_19_9
Type: TC
Location: 14597 - 15910 (-)
Gene ID: Rep_3557_c_19_10
Type: TC
Location: 15907 - 16740 (-)
Gene ID: Rep_3557_c_19_11
Type: TC
Location: 16737 - 17567 (-)
Gene ID: Rep_3557_c_19_12
Type: TC
Location: 17560 - 18726 (-)
Gene ID: Rep_3557_c_19_13
Type: TC
Location: 18868 - 20313 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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