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Cluster: Rep_3554_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3554_c_23 Rep_3554_c_23_5 3770 5428 - 4.C.1.1.4
pfam Rep_3554_c_23 Rep_3554_c_23_6 5653 7734 + GTP_EFTU | EFG_C | MMR_HSR1 | GTP_EFTU_D2 | EFG_IV | EFG_III | EF-G_D2
pfam Rep_3554_c_23 Rep_3554_c_23_7 8076 9236 + ANF_receptor | Peripla_BP_5 | Peripla_BP_6
TC Rep_3554_c_23 Rep_3554_c_23_8 9673 10554 + 3.A.1.4.10
TC Rep_3554_c_23 Rep_3554_c_23_9 10585 11703 + 3.A.1.4.8
TC Rep_3554_c_23 Rep_3554_c_23_10 11706 12464 + 3.A.1.4.10
TC Rep_3554_c_23 Rep_3554_c_23_11 12478 13188 + 3.A.1.4.10
TC Rep_3554_c_23 Rep_3554_c_23_12 13200 13808 + 2.A.115.2.14
CAZyme Rep_3554_c_23 Rep_3554_c_23_13 14194 16128 + GH5_4
Gene ID: Rep_3554_c_23_5
Type: TC
Location: 3770 - 5428 (-)
Gene ID: Rep_3554_c_23_6
Type: pfam
Location: 5653 - 7734 (+)
Gene ID: Rep_3554_c_23_7
Type: pfam
Location: 8076 - 9236 (+)
Gene ID: Rep_3554_c_23_8
Type: TC
Location: 9673 - 10554 (+)
Gene ID: Rep_3554_c_23_9
Type: TC
Location: 10585 - 11703 (+)
Gene ID: Rep_3554_c_23_10
Type: TC
Location: 11706 - 12464 (+)
Gene ID: Rep_3554_c_23_11
Type: TC
Location: 12478 - 13188 (+)
Gene ID: Rep_3554_c_23_12
Type: TC
Location: 13200 - 13808 (+)
Gene ID: Rep_3554_c_23_13
Type: CAZyme
Location: 14194 - 16128 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Ruminococcaceae
→
Genus
UMGS1601
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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