Cluster: Rep_3554_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3554
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3554_c_96 | Rep_3554_c_96_1 | 213 | 950 | + | GH25 |
| pfam | Rep_3554_c_96 | Rep_3554_c_96_2 | 1036 | 1932 | - | ABC2_membrane | ABC2_membrane_3 |
| TC | Rep_3554_c_96 | Rep_3554_c_96_3 | 1929 | 2843 | - | 3.A.1.105.3 |
| pfam | Rep_3554_c_96 | Rep_3554_c_96_4 | 3105 | 3779 | + | DUF421 |
| pfam | Rep_3554_c_96 | Rep_3554_c_96_5 | 4004 | 5956 | + | DUF6020 |
| CAZyme | Rep_3554_c_96 | Rep_3554_c_96_6 | 5977 | 6924 | + | GT2 |
Gene ID: Rep_3554_c_96_1
Type: CAZyme
Location: 213 - 950 (+)
Type: CAZyme
Location: 213 - 950 (+)
Gene ID: Rep_3554_c_96_2
Type: pfam
Location: 1036 - 1932 (-)
Type: pfam
Location: 1036 - 1932 (-)
Gene ID: Rep_3554_c_96_3
Type: TC
Location: 1929 - 2843 (-)
Type: TC
Location: 1929 - 2843 (-)
Gene ID: Rep_3554_c_96_4
Type: pfam
Location: 3105 - 3779 (+)
Type: pfam
Location: 3105 - 3779 (+)
Gene ID: Rep_3554_c_96_5
Type: pfam
Location: 4004 - 5956 (+)
Type: pfam
Location: 4004 - 5956 (+)
Gene ID: Rep_3554_c_96_6
Type: CAZyme
Location: 5977 - 6924 (+)
Type: CAZyme
Location: 5977 - 6924 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UMGS1601
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.