Cluster: Rep_3554_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3554
- CGC Family ID: CGCFAM_03515
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3554_c_78 | Rep_3554_c_78_6 | 5316 | 7727 | + | GH94 |
| pfam | Rep_3554_c_78 | Rep_3554_c_78_7 | 7784 | 7921 | + | Rubredoxin |
| CAZyme | Rep_3554_c_78 | Rep_3554_c_78_8 | 8032 | 11190 | - | GH25 |
| pfam | Rep_3554_c_78 | Rep_3554_c_78_9 | 11565 | 11747 | - | FeoB_associated |
| TC | Rep_3554_c_78 | Rep_3554_c_78_10 | 11766 | 14249 | - | 9.A.8.1.6 |
| STP | Rep_3554_c_78 | Rep_3554_c_78_11 | 14297 | 14515 | - | FeoA |
| STP | Rep_3554_c_78 | Rep_3554_c_78_12 | 14565 | 14777 | - | FeoA |
| CAZyme | Rep_3554_c_78 | Rep_3554_c_78_13 | 15087 | 16580 | + | CBM91 | GH43_12 |
Gene ID: Rep_3554_c_78_6
Type: CAZyme
Location: 5316 - 7727 (+)
Type: CAZyme
Location: 5316 - 7727 (+)
Gene ID: Rep_3554_c_78_7
Type: pfam
Location: 7784 - 7921 (+)
Type: pfam
Location: 7784 - 7921 (+)
Gene ID: Rep_3554_c_78_8
Type: CAZyme
Location: 8032 - 11190 (-)
Type: CAZyme
Location: 8032 - 11190 (-)
Gene ID: Rep_3554_c_78_9
Type: pfam
Location: 11565 - 11747 (-)
Type: pfam
Location: 11565 - 11747 (-)
Gene ID: Rep_3554_c_78_10
Type: TC
Location: 11766 - 14249 (-)
Type: TC
Location: 11766 - 14249 (-)
Gene ID: Rep_3554_c_78_11
Type: STP
Location: 14297 - 14515 (-)
Type: STP
Location: 14297 - 14515 (-)
Gene ID: Rep_3554_c_78_12
Type: STP
Location: 14565 - 14777 (-)
Type: STP
Location: 14565 - 14777 (-)
Gene ID: Rep_3554_c_78_13
Type: CAZyme
Location: 15087 - 16580 (+)
Type: CAZyme
Location: 15087 - 16580 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UMGS1601
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.