Cluster: Rep_3554_CGC10
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3554
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3554_c_62 | Rep_3554_c_62_5 | 3854 | 4714 | + | CE4 |
| TF | Rep_3554_c_62 | Rep_3554_c_62_6 | 5018 | 5245 | + | HTH_3 |
| pfam | Rep_3554_c_62 | Rep_3554_c_62_7 | 5391 | 5969 | - | PTAC |
| TC | Rep_3554_c_62 | Rep_3554_c_62_8 | 6129 | 6926 | + | 3.A.11.1.3 |
| CAZyme | Rep_3554_c_62 | Rep_3554_c_62_9 | 6948 | 8489 | + | GH13_44 |
Gene ID: Rep_3554_c_62_5
Type: CAZyme
Location: 3854 - 4714 (+)
Type: CAZyme
Location: 3854 - 4714 (+)
Gene ID: Rep_3554_c_62_6
Type: TF
Location: 5018 - 5245 (+)
Type: TF
Location: 5018 - 5245 (+)
Gene ID: Rep_3554_c_62_7
Type: pfam
Location: 5391 - 5969 (-)
Type: pfam
Location: 5391 - 5969 (-)
Gene ID: Rep_3554_c_62_8
Type: TC
Location: 6129 - 6926 (+)
Type: TC
Location: 6129 - 6926 (+)
Gene ID: Rep_3554_c_62_9
Type: CAZyme
Location: 6948 - 8489 (+)
Type: CAZyme
Location: 6948 - 8489 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Ruminococcaceae
Genus
UMGS1601
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.