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Cluster: Rep_3552_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3552_c_1 Rep_3552_c_1_2167 2465081 2466628 + 4.C.1.1.7
pfam Rep_3552_c_1 Rep_3552_c_1_2168 2466649 2468034 + Condensation
pfam Rep_3552_c_1 Rep_3552_c_1_2169 2468050 2468274 + PP-binding
TC Rep_3552_c_1 Rep_3552_c_1_2170 2468331 2469011 - 9.B.20.1.4
TC Rep_3552_c_1 Rep_3552_c_1_2171 2469028 2469762 - 9.B.20.1.4
NULL(UNKNOWN) Rep_3552_c_1 Rep_3552_c_1_2172 2469944 2470132 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3552_c_1 Rep_3552_c_1_2173 2470253 2471662 + 2.A.1.84.3
CAZyme Rep_3552_c_1 Rep_3552_c_1_2174 2471892 2472578 + GT2
CAZyme Rep_3552_c_1 Rep_3552_c_1_2175 2472609 2473370 + GT2
TC Rep_3552_c_1 Rep_3552_c_1_2176 2473380 2474240 + 3.A.1.103.1
TC Rep_3552_c_1 Rep_3552_c_1_2177 2474258 2475001 + 3.A.1.103.1
Gene ID: Rep_3552_c_1_2167
Type: TC
Location: 2465081 - 2466628 (+)
Gene ID: Rep_3552_c_1_2168
Type: pfam
Location: 2466649 - 2468034 (+)
Gene ID: Rep_3552_c_1_2169
Type: pfam
Location: 2468050 - 2468274 (+)
Gene ID: Rep_3552_c_1_2170
Type: TC
Location: 2468331 - 2469011 (-)
Gene ID: Rep_3552_c_1_2171
Type: TC
Location: 2469028 - 2469762 (-)
Gene ID: Rep_3552_c_1_2172
Type:
Location: 2469944 - 2470132 (+)
Gene ID: Rep_3552_c_1_2173
Type: TC
Location: 2470253 - 2471662 (+)
Gene ID: Rep_3552_c_1_2174
Type: CAZyme
Location: 2471892 - 2472578 (+)
Gene ID: Rep_3552_c_1_2175
Type: CAZyme
Location: 2472609 - 2473370 (+)
Gene ID: Rep_3552_c_1_2176
Type: TC
Location: 2473380 - 2474240 (+)
Gene ID: Rep_3552_c_1_2177
Type: TC
Location: 2474258 - 2475001 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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