Cluster: Rep_3552_CGC28
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3552
- CGC Family ID: CGCFAM_01726
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3552_c_1 | Rep_3552_c_1_1391 | 1572050 | 1573381 | - | 2.A.66.1.37 |
| TC | Rep_3552_c_1 | Rep_3552_c_1_1392 | 1573378 | 1573995 | - | 2.A.115.2.14 |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_1393 | 1574027 | 1574731 | - | RadC |
| CAZyme | Rep_3552_c_1 | Rep_3552_c_1_1394 | 1574860 | 1577037 | + | GH36 |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_1395 | 1577042 | 1577563 | + | RimM | PRC | PRC_RimM |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_1396 | 1577568 | 1578293 | + | tRNA_m1G_MT |
| TC | Rep_3552_c_1 | Rep_3552_c_1_1397 | 1578500 | 1578763 | + | 8.A.8.1.6 |
Gene ID: Rep_3552_c_1_1391
Type: TC
Location: 1572050 - 1573381 (-)
Type: TC
Location: 1572050 - 1573381 (-)
Gene ID: Rep_3552_c_1_1392
Type: TC
Location: 1573378 - 1573995 (-)
Type: TC
Location: 1573378 - 1573995 (-)
Gene ID: Rep_3552_c_1_1393
Type: pfam
Location: 1574027 - 1574731 (-)
Type: pfam
Location: 1574027 - 1574731 (-)
Gene ID: Rep_3552_c_1_1394
Type: CAZyme
Location: 1574860 - 1577037 (+)
Type: CAZyme
Location: 1574860 - 1577037 (+)
Gene ID: Rep_3552_c_1_1395
Type: pfam
Location: 1577042 - 1577563 (+)
Type: pfam
Location: 1577042 - 1577563 (+)
Gene ID: Rep_3552_c_1_1396
Type: pfam
Location: 1577568 - 1578293 (+)
Type: pfam
Location: 1577568 - 1578293 (+)
Gene ID: Rep_3552_c_1_1397
Type: TC
Location: 1578500 - 1578763 (+)
Type: TC
Location: 1578500 - 1578763 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
CAG-488
Species
CAG-488 sp000434915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.