Cluster: Rep_3552_CGC27
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3552
- CGC Family ID: CGCFAM_07836
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3552_c_1 | Rep_3552_c_1_1342 | 1507838 | 1508716 | + | 3.A.1.140.1 |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_1343 | 1508713 | 1509639 | + | FtsX | FtsX_ECD |
| STP | Rep_3552_c_1 | Rep_3552_c_1_1344 | 1509623 | 1510948 | + | Peptidase_M23 |
| CAZyme | Rep_3552_c_1 | Rep_3552_c_1_1345 | 1511072 | 1513453 | - | GH3 |
| NULL(UNKNOWN) | Rep_3552_c_1 | Rep_3552_c_1_1346 | 1513579 | 1513779 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_1347 | 1513776 | 1514675 | - | ABC2_membrane | ABC2_membrane_3 |
| TC | Rep_3552_c_1 | Rep_3552_c_1_1348 | 1514672 | 1515586 | - | 3.A.1.105.9 |
| STP | Rep_3552_c_1 | Rep_3552_c_1_1349 | 1515972 | 1519511 | + | Fer4 |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_1350 | 1519608 | 1520786 | - | PS_pyruv_trans |
| TC | Rep_3552_c_1 | Rep_3552_c_1_1351 | 1520783 | 1522054 | - | 3.A.1.103.5 |
| TC | Rep_3552_c_1 | Rep_3552_c_1_1352 | 1522068 | 1522886 | - | 3.A.1.103.5 |
Gene ID: Rep_3552_c_1_1342
Type: TC
Location: 1507838 - 1508716 (+)
Type: TC
Location: 1507838 - 1508716 (+)
Gene ID: Rep_3552_c_1_1343
Type: pfam
Location: 1508713 - 1509639 (+)
Type: pfam
Location: 1508713 - 1509639 (+)
Gene ID: Rep_3552_c_1_1344
Type: STP
Location: 1509623 - 1510948 (+)
Type: STP
Location: 1509623 - 1510948 (+)
Gene ID: Rep_3552_c_1_1345
Type: CAZyme
Location: 1511072 - 1513453 (-)
Type: CAZyme
Location: 1511072 - 1513453 (-)
Gene ID: Rep_3552_c_1_1346
Type:
Location: 1513579 - 1513779 (-)
Type:
Location: 1513579 - 1513779 (-)
Gene ID: Rep_3552_c_1_1347
Type: pfam
Location: 1513776 - 1514675 (-)
Type: pfam
Location: 1513776 - 1514675 (-)
Gene ID: Rep_3552_c_1_1348
Type: TC
Location: 1514672 - 1515586 (-)
Type: TC
Location: 1514672 - 1515586 (-)
Gene ID: Rep_3552_c_1_1349
Type: STP
Location: 1515972 - 1519511 (+)
Type: STP
Location: 1515972 - 1519511 (+)
Gene ID: Rep_3552_c_1_1350
Type: pfam
Location: 1519608 - 1520786 (-)
Type: pfam
Location: 1519608 - 1520786 (-)
Gene ID: Rep_3552_c_1_1351
Type: TC
Location: 1520783 - 1522054 (-)
Type: TC
Location: 1520783 - 1522054 (-)
Gene ID: Rep_3552_c_1_1352
Type: TC
Location: 1522068 - 1522886 (-)
Type: TC
Location: 1522068 - 1522886 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
CAG-488
Species
CAG-488 sp000434915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.