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Cluster: Rep_3552_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3552_c_1 Rep_3552_c_1_1193 1355661 1357082 - GT5
pfam Rep_3552_c_1 Rep_3552_c_1_1194 1357131 1358240 - NTP_transferase | Hexapep_GlmU
pfam Rep_3552_c_1 Rep_3552_c_1_1195 1358244 1359455 - NTP_transferase | Hexapep_GlmU
CAZyme Rep_3552_c_1 Rep_3552_c_1_1196 1359469 1361400 - CBM48 | GH13_9
pfam Rep_3552_c_1 Rep_3552_c_1_1197 1362480 1366097 + Ricin_B_lectin | Flg_new | Flg_new | Flg_new | Flg_new | Flg_new | Flg_new | Flg_new | Flg_new | RicinB_lectin_2 | Flg_new_2 | Flg_new_2
NULL(UNKNOWN) Rep_3552_c_1 Rep_3552_c_1_1198 1366252 1366563 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3552_c_1 Rep_3552_c_1_1199 1366853 1368727 + 9.B.18.2.1
TC Rep_3552_c_1 Rep_3552_c_1_1200 1368757 1369377 + 9.B.18.1.3
CAZyme Rep_3552_c_1 Rep_3552_c_1_1201 1369435 1370547 + GT4
TC Rep_3552_c_1 Rep_3552_c_1_1202 1370618 1371763 + 9.B.183.1.9
pfam Rep_3552_c_1 Rep_3552_c_1_1203 1371774 1372922 + PS_pyruv_trans
CAZyme Rep_3552_c_1 Rep_3552_c_1_1204 1372936 1374123 + GT4
CAZyme Rep_3552_c_1 Rep_3552_c_1_1205 1374134 1375294 + GH105
pfam Rep_3552_c_1 Rep_3552_c_1_1206 1375344 1376102 + CpsB_CapC
TC Rep_3552_c_1 Rep_3552_c_1_1207 1376157 1377851 + 8.A.3.1.2
STP Rep_3552_c_1 Rep_3552_c_1_1208 1377875 1379017 + Aminotran_1_2
sulfatase Rep_3552_c_1 Rep_3552_c_1_1209 1379093 1380904 + S1_97
TC Rep_3552_c_1 Rep_3552_c_1_1210 1380988 1382517 + 2.A.2.3.1
Gene ID: Rep_3552_c_1_1193
Type: CAZyme
Location: 1355661 - 1357082 (-)
Gene ID: Rep_3552_c_1_1194
Type: pfam
Location: 1357131 - 1358240 (-)
Gene ID: Rep_3552_c_1_1195
Type: pfam
Location: 1358244 - 1359455 (-)
Gene ID: Rep_3552_c_1_1196
Type: CAZyme
Location: 1359469 - 1361400 (-)
Gene ID: Rep_3552_c_1_1197
Type: pfam
Location: 1362480 - 1366097 (+)
Gene ID: Rep_3552_c_1_1198
Type:
Location: 1366252 - 1366563 (-)
Gene ID: Rep_3552_c_1_1199
Type: TC
Location: 1366853 - 1368727 (+)
Gene ID: Rep_3552_c_1_1200
Type: TC
Location: 1368757 - 1369377 (+)
Gene ID: Rep_3552_c_1_1201
Type: CAZyme
Location: 1369435 - 1370547 (+)
Gene ID: Rep_3552_c_1_1202
Type: TC
Location: 1370618 - 1371763 (+)
Gene ID: Rep_3552_c_1_1203
Type: pfam
Location: 1371774 - 1372922 (+)
Gene ID: Rep_3552_c_1_1204
Type: CAZyme
Location: 1372936 - 1374123 (+)
Gene ID: Rep_3552_c_1_1205
Type: CAZyme
Location: 1374134 - 1375294 (+)
Gene ID: Rep_3552_c_1_1206
Type: pfam
Location: 1375344 - 1376102 (+)
Gene ID: Rep_3552_c_1_1207
Type: TC
Location: 1376157 - 1377851 (+)
Gene ID: Rep_3552_c_1_1208
Type: STP
Location: 1377875 - 1379017 (+)
Gene ID: Rep_3552_c_1_1209
Type: sulfatase
Location: 1379093 - 1380904 (+)
Gene ID: Rep_3552_c_1_1210
Type: TC
Location: 1380988 - 1382517 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3552_c_1_1195 vegan > omnivore 1.15025 0.04449

🧭 Explore Read Mapping of CGC

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