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Cluster: Rep_3552_CGC22

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3552_c_1 Rep_3552_c_1_1139 1292070 1294100 + 3.A.3.6.10
NULL(UNKNOWN) Rep_3552_c_1 Rep_3552_c_1_1140 1294162 1296141 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3552_c_1 Rep_3552_c_1_1141 1296277 1296933 + 9.B.105.1.3
pfam Rep_3552_c_1 Rep_3552_c_1_1142 1297103 1298593 + Metallophos | Pur_ac_phosph_N
TC Rep_3552_c_1 Rep_3552_c_1_1143 1298649 1299317 - 1.A.62.2.1
pfam Rep_3552_c_1 Rep_3552_c_1_1144 1299319 1300020 - Metallophos | Metallophos_2
CAZyme Rep_3552_c_1 Rep_3552_c_1_1145 1300025 1302151 - GH25
Gene ID: Rep_3552_c_1_1139
Type: TC
Location: 1292070 - 1294100 (+)
Gene ID: Rep_3552_c_1_1140
Type:
Location: 1294162 - 1296141 (-)
Gene ID: Rep_3552_c_1_1141
Type: TC
Location: 1296277 - 1296933 (+)
Gene ID: Rep_3552_c_1_1142
Type: pfam
Location: 1297103 - 1298593 (+)
Gene ID: Rep_3552_c_1_1143
Type: TC
Location: 1298649 - 1299317 (-)
Gene ID: Rep_3552_c_1_1144
Type: pfam
Location: 1299319 - 1300020 (-)
Gene ID: Rep_3552_c_1_1145
Type: CAZyme
Location: 1300025 - 1302151 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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