Cluster: Rep_3552_CGC16
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3552
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3552_c_1 | Rep_3552_c_1_624 | 701434 | 702708 | - | 2.A.66.2.15 |
| NULL(UNKNOWN) | Rep_3552_c_1 | Rep_3552_c_1_625 | 702710 | 703849 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_3552_c_1 | Rep_3552_c_1_626 | 703915 | 705069 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3552_c_1 | Rep_3552_c_1_627 | 705082 | 706230 | - | GT4 |
| CAZyme | Rep_3552_c_1 | Rep_3552_c_1_628 | 706227 | 707369 | - | GT4 |
| TC | Rep_3552_c_1 | Rep_3552_c_1_629 | 707362 | 708081 | - | 9.B.18.1.3 |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_630 | 708094 | 709287 | - | ATP-grasp_3 | CPSase_L_D2 | Dala_Dala_lig_C | ATP-grasp_4 | LAL_C2 | RS_preATP-grasp-like |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_631 | 709296 | 709766 | - | Acetyltransf_1 | Acetyltransf_7 |
| CAZyme | Rep_3552_c_1 | Rep_3552_c_1_632 | 710115 | 710978 | - | GH16_3 |
| NULL(UNKNOWN) | Rep_3552_c_1 | Rep_3552_c_1_633 | 711072 | 711923 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3552_c_1 | Rep_3552_c_1_634 | 712166 | 715366 | - | Dockerin_1 | LRR_5 | LRR_5 | LRR_5 | LRR_5 | LRR_5 |
| TC | Rep_3552_c_1 | Rep_3552_c_1_635 | 715672 | 718296 | - | 4.A.2.1.17 |
Gene ID: Rep_3552_c_1_624
Type: TC
Location: 701434 - 702708 (-)
Type: TC
Location: 701434 - 702708 (-)
Gene ID: Rep_3552_c_1_625
Type:
Location: 702710 - 703849 (-)
Type:
Location: 702710 - 703849 (-)
Gene ID: Rep_3552_c_1_626
Type:
Location: 703915 - 705069 (-)
Type:
Location: 703915 - 705069 (-)
Gene ID: Rep_3552_c_1_627
Type: CAZyme
Location: 705082 - 706230 (-)
Type: CAZyme
Location: 705082 - 706230 (-)
Gene ID: Rep_3552_c_1_628
Type: CAZyme
Location: 706227 - 707369 (-)
Type: CAZyme
Location: 706227 - 707369 (-)
Gene ID: Rep_3552_c_1_629
Type: TC
Location: 707362 - 708081 (-)
Type: TC
Location: 707362 - 708081 (-)
Gene ID: Rep_3552_c_1_630
Type: pfam
Location: 708094 - 709287 (-)
Type: pfam
Location: 708094 - 709287 (-)
Gene ID: Rep_3552_c_1_631
Type: pfam
Location: 709296 - 709766 (-)
Type: pfam
Location: 709296 - 709766 (-)
Gene ID: Rep_3552_c_1_632
Type: CAZyme
Location: 710115 - 710978 (-)
Type: CAZyme
Location: 710115 - 710978 (-)
Gene ID: Rep_3552_c_1_633
Type:
Location: 711072 - 711923 (-)
Type:
Location: 711072 - 711923 (-)
Gene ID: Rep_3552_c_1_634
Type: pfam
Location: 712166 - 715366 (-)
Type: pfam
Location: 712166 - 715366 (-)
Gene ID: Rep_3552_c_1_635
Type: TC
Location: 715672 - 718296 (-)
Type: TC
Location: 715672 - 718296 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
CAG-488
Species
CAG-488 sp000434915
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.