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Cluster: Rep_3552_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3552_c_1 Rep_3552_c_1_536 589602 590723 - GT4
TC Rep_3552_c_1 Rep_3552_c_1_537 590741 592150 - 2.A.2.1.1
pfam Rep_3552_c_1 Rep_3552_c_1_538 592292 594064 - Dockerin_1 | Cohesin | LRR_5
TC Rep_3552_c_1 Rep_3552_c_1_539 594513 595223 - 3.A.1.4.10
TC Rep_3552_c_1 Rep_3552_c_1_540 595228 595998 - 3.A.1.4.10
TC Rep_3552_c_1 Rep_3552_c_1_541 596001 597140 - 3.A.1.4.8
TC Rep_3552_c_1 Rep_3552_c_1_542 597144 598010 - 3.A.1.4.10
TC Rep_3552_c_1 Rep_3552_c_1_543 598185 599342 - 3.A.1.4.10
Gene ID: Rep_3552_c_1_536
Type: CAZyme
Location: 589602 - 590723 (-)
Gene ID: Rep_3552_c_1_537
Type: TC
Location: 590741 - 592150 (-)
Gene ID: Rep_3552_c_1_538
Type: pfam
Location: 592292 - 594064 (-)
Gene ID: Rep_3552_c_1_539
Type: TC
Location: 594513 - 595223 (-)
Gene ID: Rep_3552_c_1_540
Type: TC
Location: 595228 - 595998 (-)
Gene ID: Rep_3552_c_1_541
Type: TC
Location: 596001 - 597140 (-)
Gene ID: Rep_3552_c_1_542
Type: TC
Location: 597144 - 598010 (-)
Gene ID: Rep_3552_c_1_543
Type: TC
Location: 598185 - 599342 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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