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Cluster: Rep_3524_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3524_c_0 Rep_3524_c_0_430 435826 436650 - 9.A.40.1.1
pfam Rep_3524_c_0 Rep_3524_c_0_431 436780 437829 + Methyltransf_21
TC Rep_3524_c_0 Rep_3524_c_0_432 437883 438665 + 2.A.102.4.4
sulfatase Rep_3524_c_0 Rep_3524_c_0_433 438726 440051 + S1_65
TC Rep_3524_c_0 Rep_3524_c_0_434 440052 441581 + 2.A.2.3.4
pfam Rep_3524_c_0 Rep_3524_c_0_435 441624 443468 + Zn_Ribbon_1
pfam Rep_3524_c_0 Rep_3524_c_0_436 443534 444085 - Ribosomal_S30AE | Ribosom_S30AE_C
TC Rep_3524_c_0 Rep_3524_c_0_437 444263 446056 - 3.A.1.111.2
TC Rep_3524_c_0 Rep_3524_c_0_438 446056 447867 - 3.A.1.111.2
NULL(UNKNOWN) Rep_3524_c_0 Rep_3524_c_0_439 447961 448056 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3524_c_0 Rep_3524_c_0_440 448258 449934 - 2.A.2.3.3
CAZyme Rep_3524_c_0 Rep_3524_c_0_441 450108 451649 - GH28
TC Rep_3524_c_0 Rep_3524_c_0_442 451662 453302 - 2.A.58.2.2
Gene ID: Rep_3524_c_0_430
Type: TC
Location: 435826 - 436650 (-)
Gene ID: Rep_3524_c_0_431
Type: pfam
Location: 436780 - 437829 (+)
Gene ID: Rep_3524_c_0_432
Type: TC
Location: 437883 - 438665 (+)
Gene ID: Rep_3524_c_0_433
Type: sulfatase
Location: 438726 - 440051 (+)
Gene ID: Rep_3524_c_0_434
Type: TC
Location: 440052 - 441581 (+)
Gene ID: Rep_3524_c_0_435
Type: pfam
Location: 441624 - 443468 (+)
Gene ID: Rep_3524_c_0_436
Type: pfam
Location: 443534 - 444085 (-)
Gene ID: Rep_3524_c_0_437
Type: TC
Location: 444263 - 446056 (-)
Gene ID: Rep_3524_c_0_438
Type: TC
Location: 446056 - 447867 (-)
Gene ID: Rep_3524_c_0_439
Type:
Location: 447961 - 448056 (-)
Gene ID: Rep_3524_c_0_440
Type: TC
Location: 448258 - 449934 (-)
Gene ID: Rep_3524_c_0_441
Type: CAZyme
Location: 450108 - 451649 (-)
Gene ID: Rep_3524_c_0_442
Type: TC
Location: 451662 - 453302 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3524_c_0_440 vegetarian > omnivore 1.09701 0.00749

🧭 Explore Read Mapping of CGC

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