Cluster: Rep_3524_CGC4
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 10
- Substrate:
- Genome ID: Rep_3524
- CGC Family ID: CGCFAM_00002
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_334 | 347938 | 348918 | - | GT2 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_335 | 348918 | 349883 | - | GT2 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_336 | 349880 | 350860 | - | GT2 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_337 | 350817 | 351740 | - | GT14 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_338 | 351849 | 352811 | - | GT2 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_339 | 352812 | 353825 | - | GT2 |
| NULL(UNKNOWN) | Rep_3524_c_0 | Rep_3524_c_0_340 | 353836 | 355032 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_341 | 355037 | 356155 | - | GT4 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_342 | 356165 | 357151 | - | GT2 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_343 | 357154 | 358233 | - | GT4 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_344 | 358230 | 359366 | - | GT4 |
| pfam | Rep_3524_c_0 | Rep_3524_c_0_345 | 359371 | 360387 | - | Ldh_2 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_346 | 360398 | 361018 | - | 9.B.18.1.2 |
Gene ID: Rep_3524_c_0_334
Type: CAZyme
Location: 347938 - 348918 (-)
Type: CAZyme
Location: 347938 - 348918 (-)
Gene ID: Rep_3524_c_0_335
Type: CAZyme
Location: 348918 - 349883 (-)
Type: CAZyme
Location: 348918 - 349883 (-)
Gene ID: Rep_3524_c_0_336
Type: CAZyme
Location: 349880 - 350860 (-)
Type: CAZyme
Location: 349880 - 350860 (-)
Gene ID: Rep_3524_c_0_337
Type: CAZyme
Location: 350817 - 351740 (-)
Type: CAZyme
Location: 350817 - 351740 (-)
Gene ID: Rep_3524_c_0_338
Type: CAZyme
Location: 351849 - 352811 (-)
Type: CAZyme
Location: 351849 - 352811 (-)
Gene ID: Rep_3524_c_0_339
Type: CAZyme
Location: 352812 - 353825 (-)
Type: CAZyme
Location: 352812 - 353825 (-)
Gene ID: Rep_3524_c_0_340
Type:
Location: 353836 - 355032 (-)
Type:
Location: 353836 - 355032 (-)
Gene ID: Rep_3524_c_0_341
Type: CAZyme
Location: 355037 - 356155 (-)
Type: CAZyme
Location: 355037 - 356155 (-)
Gene ID: Rep_3524_c_0_342
Type: CAZyme
Location: 356165 - 357151 (-)
Type: CAZyme
Location: 356165 - 357151 (-)
Gene ID: Rep_3524_c_0_343
Type: CAZyme
Location: 357154 - 358233 (-)
Type: CAZyme
Location: 357154 - 358233 (-)
Gene ID: Rep_3524_c_0_344
Type: CAZyme
Location: 358230 - 359366 (-)
Type: CAZyme
Location: 358230 - 359366 (-)
Gene ID: Rep_3524_c_0_345
Type: pfam
Location: 359371 - 360387 (-)
Type: pfam
Location: 359371 - 360387 (-)
Gene ID: Rep_3524_c_0_346
Type: TC
Location: 360398 - 361018 (-)
Type: TC
Location: 360398 - 361018 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp003526845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.