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Cluster: Rep_3524_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3524_c_0 Rep_3524_c_0_1302 1381835 1383922 - GH95
pfam Rep_3524_c_0 Rep_3524_c_0_1303 1384517 1387180 + fn3 | MBG_3 | MBG_3 | MBG_3
TC Rep_3524_c_0 Rep_3524_c_0_1304 1387374 1388954 + 2.A.50.2.1
NULL(UNKNOWN) Rep_3524_c_0 Rep_3524_c_0_1305 1388957 1390051 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3524_c_0 Rep_3524_c_0_1306 1390131 1390814 - 9.B.116.3.1
TC Rep_3524_c_0 Rep_3524_c_0_1307 1390923 1392341 - 2.A.66.1.13
pfam Rep_3524_c_0 Rep_3524_c_0_1308 1392344 1393201 - RrnaAD
TF Rep_3524_c_0 Rep_3524_c_0_1309 1393440 1393913 + MarR
TC Rep_3524_c_0 Rep_3524_c_0_1310 1393906 1395660 + 3.A.1.135.5
TC Rep_3524_c_0 Rep_3524_c_0_1311 1395660 1397522 + 3.A.1.135.5
Gene ID: Rep_3524_c_0_1302
Type: CAZyme
Location: 1381835 - 1383922 (-)
Gene ID: Rep_3524_c_0_1303
Type: pfam
Location: 1384517 - 1387180 (+)
Gene ID: Rep_3524_c_0_1304
Type: TC
Location: 1387374 - 1388954 (+)
Gene ID: Rep_3524_c_0_1305
Type:
Location: 1388957 - 1390051 (+)
Gene ID: Rep_3524_c_0_1306
Type: TC
Location: 1390131 - 1390814 (-)
Gene ID: Rep_3524_c_0_1307
Type: TC
Location: 1390923 - 1392341 (-)
Gene ID: Rep_3524_c_0_1308
Type: pfam
Location: 1392344 - 1393201 (-)
Gene ID: Rep_3524_c_0_1309
Type: TF
Location: 1393440 - 1393913 (+)
Gene ID: Rep_3524_c_0_1310
Type: TC
Location: 1393906 - 1395660 (+)
Gene ID: Rep_3524_c_0_1311
Type: TC
Location: 1395660 - 1397522 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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