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Cluster: Rep_3524_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3524_c_0 Rep_3524_c_0_1212 1271202 1272740 + 3.A.1.2.12
TC Rep_3524_c_0 Rep_3524_c_0_1213 1272740 1273756 + 3.A.1.2.10
TC Rep_3524_c_0 Rep_3524_c_0_1214 1273847 1274839 + 3.A.1.2.17
STP Rep_3524_c_0 Rep_3524_c_0_1215 1274841 1275380 + Pribosyltran
pfam Rep_3524_c_0 Rep_3524_c_0_1216 1275516 1276298 + DUF218
TC Rep_3524_c_0 Rep_3524_c_0_1217 1276371 1277705 - 2.A.66.1.37
NULL(UNKNOWN) Rep_3524_c_0 Rep_3524_c_0_1218 1278176 1278337 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3524_c_0 Rep_3524_c_0_1219 1278649 1280028 + GH29
CAZyme Rep_3524_c_0 Rep_3524_c_0_1220 1280197 1282500 - GH31_2
peptidase Rep_3524_c_0 Rep_3524_c_0_1221 1282500 1283828 - S09.UPW
TC Rep_3524_c_0 Rep_3524_c_0_1222 1283825 1285249 - 2.A.2.3.1
pfam Rep_3524_c_0 Rep_3524_c_0_1223 1285981 1286961 + GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
NULL(UNKNOWN) Rep_3524_c_0 Rep_3524_c_0_1224 1287613 1287897 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_3524_c_0 Rep_3524_c_0_1225 1287987 1290344 - GH2
TC Rep_3524_c_0 Rep_3524_c_0_1226 1290365 1291525 - 2.A.4.7.6
Gene ID: Rep_3524_c_0_1212
Type: TC
Location: 1271202 - 1272740 (+)
Gene ID: Rep_3524_c_0_1213
Type: TC
Location: 1272740 - 1273756 (+)
Gene ID: Rep_3524_c_0_1214
Type: TC
Location: 1273847 - 1274839 (+)
Gene ID: Rep_3524_c_0_1215
Type: STP
Location: 1274841 - 1275380 (+)
Gene ID: Rep_3524_c_0_1216
Type: pfam
Location: 1275516 - 1276298 (+)
Gene ID: Rep_3524_c_0_1217
Type: TC
Location: 1276371 - 1277705 (-)
Gene ID: Rep_3524_c_0_1218
Type:
Location: 1278176 - 1278337 (+)
Gene ID: Rep_3524_c_0_1219
Type: CAZyme
Location: 1278649 - 1280028 (+)
Gene ID: Rep_3524_c_0_1220
Type: CAZyme
Location: 1280197 - 1282500 (-)
Gene ID: Rep_3524_c_0_1221
Type: peptidase
Location: 1282500 - 1283828 (-)
Gene ID: Rep_3524_c_0_1222
Type: TC
Location: 1283825 - 1285249 (-)
Gene ID: Rep_3524_c_0_1223
Type: pfam
Location: 1285981 - 1286961 (+)
Gene ID: Rep_3524_c_0_1224
Type:
Location: 1287613 - 1287897 (-)
Gene ID: Rep_3524_c_0_1225
Type: CAZyme
Location: 1287987 - 1290344 (-)
Gene ID: Rep_3524_c_0_1226
Type: TC
Location: 1290365 - 1291525 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3524_c_0_1220 vegan > omnivore 6.71573 0.01829
Rep_3524_c_0_1220 vegetarian > omnivore 7.42230 0.00749
Rep_3524_c_0_1221 vegan > omnivore 6.24768 0.01829
Rep_3524_c_0_1221 vegetarian > omnivore 7.04828 0.00749
Rep_3524_c_0_1222 vegan > omnivore 3.90478 0.01829
Rep_3524_c_0_1222 vegetarian > omnivore 4.68678 0.00749

🧭 Explore Read Mapping of CGC

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