Cluster: Rep_3524_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3524
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3524_c_0 | Rep_3524_c_0_1163 | 1213669 | 1215195 | + | 2.A.21.2.5 |
| pfam | Rep_3524_c_0 | Rep_3524_c_0_1164 | 1215259 | 1215564 | - | Thioredoxin | Thioredoxin_2 | Thioredoxin_8 | Thioredoxin_9 |
| pfam | Rep_3524_c_0 | Rep_3524_c_0_1165 | 1215648 | 1216481 | - | Hydrolase | S6PP | Hydrolase_3 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_1166 | 1216600 | 1217970 | + | GH30_4 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1167 | 1217993 | 1219327 | + | 2.A.66.1.26 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1168 | 1219511 | 1222324 | - | 3.A.5.1.3 |
| NULL(UNKNOWN) | Rep_3524_c_0 | Rep_3524_c_0_1169 | 1222473 | 1223114 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1170 | 1223425 | 1224042 | + | 9.B.18.1.2 |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_1171 | 1224070 | 1227129 | + | GH2 |
| pfam | Rep_3524_c_0 | Rep_3524_c_0_1172 | 1227258 | 1228685 | + | Radical_SAM |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1173 | 1228778 | 1230055 | + | 9.A.40.2.2 |
Gene ID: Rep_3524_c_0_1163
Type: TC
Location: 1213669 - 1215195 (+)
Type: TC
Location: 1213669 - 1215195 (+)
Gene ID: Rep_3524_c_0_1164
Type: pfam
Location: 1215259 - 1215564 (-)
Type: pfam
Location: 1215259 - 1215564 (-)
Gene ID: Rep_3524_c_0_1165
Type: pfam
Location: 1215648 - 1216481 (-)
Type: pfam
Location: 1215648 - 1216481 (-)
Gene ID: Rep_3524_c_0_1166
Type: CAZyme
Location: 1216600 - 1217970 (+)
Type: CAZyme
Location: 1216600 - 1217970 (+)
Gene ID: Rep_3524_c_0_1167
Type: TC
Location: 1217993 - 1219327 (+)
Type: TC
Location: 1217993 - 1219327 (+)
Gene ID: Rep_3524_c_0_1168
Type: TC
Location: 1219511 - 1222324 (-)
Type: TC
Location: 1219511 - 1222324 (-)
Gene ID: Rep_3524_c_0_1169
Type:
Location: 1222473 - 1223114 (-)
Type:
Location: 1222473 - 1223114 (-)
Gene ID: Rep_3524_c_0_1170
Type: TC
Location: 1223425 - 1224042 (+)
Type: TC
Location: 1223425 - 1224042 (+)
Gene ID: Rep_3524_c_0_1171
Type: CAZyme
Location: 1224070 - 1227129 (+)
Type: CAZyme
Location: 1224070 - 1227129 (+)
Gene ID: Rep_3524_c_0_1172
Type: pfam
Location: 1227258 - 1228685 (+)
Type: pfam
Location: 1227258 - 1228685 (+)
Gene ID: Rep_3524_c_0_1173
Type: TC
Location: 1228778 - 1230055 (+)
Type: TC
Location: 1228778 - 1230055 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp003526845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3524_c_0_1163 | vegetarian > omnivore | 1.82012 | 0.00749 |
| Rep_3524_c_0_1172 | vegetarian > omnivore | 1.20883 | 0.00749 |