Cluster: Rep_3524_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3524
- CGC Family ID: CGCFAM_01967
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3524_c_0 | Rep_3524_c_0_1076 | 1120225 | 1121565 | - | 2.A.66.1.13 |
| NULL(UNKNOWN) | Rep_3524_c_0 | Rep_3524_c_0_1077 | 1121808 | 1122041 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1078 | 1122082 | 1123860 | - | 2.A.114.1.3 |
| STP | Rep_3524_c_0 | Rep_3524_c_0_1079 | 1124381 | 1125496 | - | Rhodanese |
| CAZyme | Rep_3524_c_0 | Rep_3524_c_0_1080 | 1125518 | 1127155 | - | GH36 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1081 | 1127228 | 1127986 | - | 3.A.1.3.14 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1082 | 1128000 | 1128659 | - | 3.A.1.3.15 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1083 | 1128753 | 1129547 | - | 3.A.1.3.27 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1084 | 1129810 | 1130700 | + | 3.A.1.3.15 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1085 | 1130767 | 1131480 | + | 3.A.1.3.20 |
| TC | Rep_3524_c_0 | Rep_3524_c_0_1086 | 1131452 | 1132210 | + | 3.A.1.3.25 |
Gene ID: Rep_3524_c_0_1076
Type: TC
Location: 1120225 - 1121565 (-)
Type: TC
Location: 1120225 - 1121565 (-)
Gene ID: Rep_3524_c_0_1077
Type:
Location: 1121808 - 1122041 (-)
Type:
Location: 1121808 - 1122041 (-)
Gene ID: Rep_3524_c_0_1078
Type: TC
Location: 1122082 - 1123860 (-)
Type: TC
Location: 1122082 - 1123860 (-)
Gene ID: Rep_3524_c_0_1079
Type: STP
Location: 1124381 - 1125496 (-)
Type: STP
Location: 1124381 - 1125496 (-)
Gene ID: Rep_3524_c_0_1080
Type: CAZyme
Location: 1125518 - 1127155 (-)
Type: CAZyme
Location: 1125518 - 1127155 (-)
Gene ID: Rep_3524_c_0_1081
Type: TC
Location: 1127228 - 1127986 (-)
Type: TC
Location: 1127228 - 1127986 (-)
Gene ID: Rep_3524_c_0_1082
Type: TC
Location: 1128000 - 1128659 (-)
Type: TC
Location: 1128000 - 1128659 (-)
Gene ID: Rep_3524_c_0_1083
Type: TC
Location: 1128753 - 1129547 (-)
Type: TC
Location: 1128753 - 1129547 (-)
Gene ID: Rep_3524_c_0_1084
Type: TC
Location: 1129810 - 1130700 (+)
Type: TC
Location: 1129810 - 1130700 (+)
Gene ID: Rep_3524_c_0_1085
Type: TC
Location: 1130767 - 1131480 (+)
Type: TC
Location: 1130767 - 1131480 (+)
Gene ID: Rep_3524_c_0_1086
Type: TC
Location: 1131452 - 1132210 (+)
Type: TC
Location: 1131452 - 1132210 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp003526845
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3524_c_0_1084 | vegan > omnivore | 2.33504 | 0.01829 |
| Rep_3524_c_0_1084 | vegetarian > omnivore | 2.43751 | 0.00749 |
| Rep_3524_c_0_1085 | vegan > omnivore | 2.73304 | 0.01829 |
| Rep_3524_c_0_1085 | vegetarian > omnivore | 2.58620 | 0.00749 |