Cluster: Rep_3514_CGC24
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3514
- CGC Family ID: CGCFAM_02441
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3514_c_60 | Rep_3514_c_60_33 | 32716 | 33783 | - | 3.A.1.2.3 |
| TC | Rep_3514_c_60 | Rep_3514_c_60_34 | 33795 | 35300 | - | 3.A.1.2.3 |
| TC | Rep_3514_c_60 | Rep_3514_c_60_35 | 35315 | 36385 | - | 3.A.1.2.3 |
| TF | Rep_3514_c_60 | Rep_3514_c_60_36 | 36580 | 37416 | - | HTH_AraC |
| TC | Rep_3514_c_60 | Rep_3514_c_60_37 | 37842 | 39200 | - | 2.A.22.5.3 |
| pfam | Rep_3514_c_60 | Rep_3514_c_60_38 | 39448 | 40164 | + | RadC | HHH_2 | UPF0758_N |
| STP | Rep_3514_c_60 | Rep_3514_c_60_39 | 40171 | 41394 | + | HD |
| CAZyme | Rep_3514_c_60 | Rep_3514_c_60_40 | 41411 | 42457 | + | GH18 |
Gene ID: Rep_3514_c_60_33
Type: TC
Location: 32716 - 33783 (-)
Type: TC
Location: 32716 - 33783 (-)
Gene ID: Rep_3514_c_60_34
Type: TC
Location: 33795 - 35300 (-)
Type: TC
Location: 33795 - 35300 (-)
Gene ID: Rep_3514_c_60_35
Type: TC
Location: 35315 - 36385 (-)
Type: TC
Location: 35315 - 36385 (-)
Gene ID: Rep_3514_c_60_36
Type: TF
Location: 36580 - 37416 (-)
Type: TF
Location: 36580 - 37416 (-)
Gene ID: Rep_3514_c_60_37
Type: TC
Location: 37842 - 39200 (-)
Type: TC
Location: 37842 - 39200 (-)
Gene ID: Rep_3514_c_60_38
Type: pfam
Location: 39448 - 40164 (+)
Type: pfam
Location: 39448 - 40164 (+)
Gene ID: Rep_3514_c_60_39
Type: STP
Location: 40171 - 41394 (+)
Type: STP
Location: 40171 - 41394 (+)
Gene ID: Rep_3514_c_60_40
Type: CAZyme
Location: 41411 - 42457 (+)
Type: CAZyme
Location: 41411 - 42457 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.