Cluster: Rep_3514_CGC10
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_3514
- CGC Family ID: CGCFAM_00871
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3514_c_24 | Rep_3514_c_24_30 | 27866 | 28531 | + | 2.A.115.2.8 |
| TF | Rep_3514_c_24 | Rep_3514_c_24_31 | 28819 | 30039 | - | HTH_AraC | HTH_AraC |
| pfam | Rep_3514_c_24 | Rep_3514_c_24_32 | 30183 | 31739 | + | MFS_2 |
| CAZyme | Rep_3514_c_24 | Rep_3514_c_24_33 | 31821 | 34031 | + | GH2 |
| CAZyme | Rep_3514_c_24 | Rep_3514_c_24_34 | 34043 | 35371 | + | GH1 |
| pfam | Rep_3514_c_24 | Rep_3514_c_24_35 | 35391 | 36257 | + | AP_endonuc_2 |
| CAZyme | Rep_3514_c_24 | Rep_3514_c_24_36 | 36271 | 38859 | + | CBM67 | GH78 |
Gene ID: Rep_3514_c_24_30
Type: TC
Location: 27866 - 28531 (+)
Type: TC
Location: 27866 - 28531 (+)
Gene ID: Rep_3514_c_24_31
Type: TF
Location: 28819 - 30039 (-)
Type: TF
Location: 28819 - 30039 (-)
Gene ID: Rep_3514_c_24_32
Type: pfam
Location: 30183 - 31739 (+)
Type: pfam
Location: 30183 - 31739 (+)
Gene ID: Rep_3514_c_24_33
Type: CAZyme
Location: 31821 - 34031 (+)
Type: CAZyme
Location: 31821 - 34031 (+)
Gene ID: Rep_3514_c_24_34
Type: CAZyme
Location: 34043 - 35371 (+)
Type: CAZyme
Location: 34043 - 35371 (+)
Gene ID: Rep_3514_c_24_35
Type: pfam
Location: 35391 - 36257 (+)
Type: pfam
Location: 35391 - 36257 (+)
Gene ID: Rep_3514_c_24_36
Type: CAZyme
Location: 36271 - 38859 (+)
Type: CAZyme
Location: 36271 - 38859 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.