Cluster: Rep_3508_CGC7
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 5
- Substrate:
- Genome ID: Rep_3508
- CGC Family ID: CGCFAM_10149
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3508_c_19 | Rep_3508_c_19_3 | 1407 | 3200 | - | 3.A.1.111.2 |
| TC | Rep_3508_c_19 | Rep_3508_c_19_4 | 3187 | 5013 | - | 3.A.1.111.2 |
| NULL(UNKNOWN) | Rep_3508_c_19 | Rep_3508_c_19_5 | 5097 | 5195 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3508_c_19 | Rep_3508_c_19_6 | 5349 | 6299 | + | 2.A.58.2.2 |
| TF | Rep_3508_c_19 | Rep_3508_c_19_7 | 6424 | 7038 | + | HTH_3 |
| CAZyme | Rep_3508_c_19 | Rep_3508_c_19_8 | 7089 | 9122 | - | PL35 |
| pfam | Rep_3508_c_19 | Rep_3508_c_19_9 | 9342 | 10235 | + | 2-oxoacid_dh | 2-oxoacid_dh |
| pfam | Rep_3508_c_19 | Rep_3508_c_19_10 | 10359 | 11243 | - | DUF362 |
| CAZyme | Rep_3508_c_19 | Rep_3508_c_19_11 | 11255 | 12685 | - | GH20 |
| NULL(UNKNOWN) | Rep_3508_c_19 | Rep_3508_c_19_12 | 12776 | 12997 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Rep_3508_c_19 | Rep_3508_c_19_13 | 13193 | 15286 | - | Metallophos | PQQ_2 | PQQ_2 | MetallophosN |
| CAZyme | Rep_3508_c_19 | Rep_3508_c_19_14 | 15322 | 16371 | - | GH16 |
| pfam | Rep_3508_c_19 | Rep_3508_c_19_15 | 16376 | 17854 | - | Metallophos |
| CAZyme | Rep_3508_c_19 | Rep_3508_c_19_16 | 17867 | 19336 | - | GH29 |
| CAZyme | Rep_3508_c_19 | Rep_3508_c_19_17 | 19341 | 21464 | - | GH89 |
Gene ID: Rep_3508_c_19_3
Type: TC
Location: 1407 - 3200 (-)
Type: TC
Location: 1407 - 3200 (-)
Gene ID: Rep_3508_c_19_4
Type: TC
Location: 3187 - 5013 (-)
Type: TC
Location: 3187 - 5013 (-)
Gene ID: Rep_3508_c_19_5
Type:
Location: 5097 - 5195 (-)
Type:
Location: 5097 - 5195 (-)
Gene ID: Rep_3508_c_19_6
Type: TC
Location: 5349 - 6299 (+)
Type: TC
Location: 5349 - 6299 (+)
Gene ID: Rep_3508_c_19_7
Type: TF
Location: 6424 - 7038 (+)
Type: TF
Location: 6424 - 7038 (+)
Gene ID: Rep_3508_c_19_8
Type: CAZyme
Location: 7089 - 9122 (-)
Type: CAZyme
Location: 7089 - 9122 (-)
Gene ID: Rep_3508_c_19_9
Type: pfam
Location: 9342 - 10235 (+)
Type: pfam
Location: 9342 - 10235 (+)
Gene ID: Rep_3508_c_19_10
Type: pfam
Location: 10359 - 11243 (-)
Type: pfam
Location: 10359 - 11243 (-)
Gene ID: Rep_3508_c_19_11
Type: CAZyme
Location: 11255 - 12685 (-)
Type: CAZyme
Location: 11255 - 12685 (-)
Gene ID: Rep_3508_c_19_12
Type:
Location: 12776 - 12997 (+)
Type:
Location: 12776 - 12997 (+)
Gene ID: Rep_3508_c_19_13
Type: pfam
Location: 13193 - 15286 (-)
Type: pfam
Location: 13193 - 15286 (-)
Gene ID: Rep_3508_c_19_14
Type: CAZyme
Location: 15322 - 16371 (-)
Type: CAZyme
Location: 15322 - 16371 (-)
Gene ID: Rep_3508_c_19_15
Type: pfam
Location: 16376 - 17854 (-)
Type: pfam
Location: 16376 - 17854 (-)
Gene ID: Rep_3508_c_19_16
Type: CAZyme
Location: 17867 - 19336 (-)
Type: CAZyme
Location: 17867 - 19336 (-)
Gene ID: Rep_3508_c_19_17
Type: CAZyme
Location: 19341 - 21464 (-)
Type: CAZyme
Location: 19341 - 21464 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp902489595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.