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Cluster: Rep_3508_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_3508_c_11 Rep_3508_c_11_7 5324 6622 + GH27
TC Rep_3508_c_11 Rep_3508_c_11_8 6697 8304 - 3.A.1.121.4
NULL(UNKNOWN) Rep_3508_c_11 Rep_3508_c_11_9 8711 9475 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_3508_c_11 Rep_3508_c_11_10 9768 10976 - 9.B.10.1.1
pfam Rep_3508_c_11 Rep_3508_c_11_11 11171 12634 + DUF1846 | DUF1846_C
STP Rep_3508_c_11 Rep_3508_c_11_12 13022 14641 + CbiA
TC Rep_3508_c_11 Rep_3508_c_11_13 14735 16108 - 2.A.25.1.5
Gene ID: Rep_3508_c_11_7
Type: CAZyme
Location: 5324 - 6622 (+)
Gene ID: Rep_3508_c_11_8
Type: TC
Location: 6697 - 8304 (-)
Gene ID: Rep_3508_c_11_9
Type:
Location: 8711 - 9475 (-)
Gene ID: Rep_3508_c_11_10
Type: TC
Location: 9768 - 10976 (-)
Gene ID: Rep_3508_c_11_11
Type: pfam
Location: 11171 - 12634 (+)
Gene ID: Rep_3508_c_11_12
Type: STP
Location: 13022 - 14641 (+)
Gene ID: Rep_3508_c_11_13
Type: TC
Location: 14735 - 16108 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_3508_c_11_8 vegan > omnivore 1.01095 0.03762

🧭 Explore Read Mapping of CGC

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