Cluster: Rep_3508_CGC2
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3508
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3508_c_0 | Rep_3508_c_0_58 | 64802 | 66073 | - | 9.A.40.2.2 |
| pfam | Rep_3508_c_0 | Rep_3508_c_0_59 | 66255 | 67685 | - | Radical_SAM |
| CAZyme | Rep_3508_c_0 | Rep_3508_c_0_60 | 67983 | 71042 | - | GH2 |
| TC | Rep_3508_c_0 | Rep_3508_c_0_61 | 71063 | 71680 | - | 9.B.18.1.2 |
Gene ID: Rep_3508_c_0_58
Type: TC
Location: 64802 - 66073 (-)
Type: TC
Location: 64802 - 66073 (-)
Gene ID: Rep_3508_c_0_59
Type: pfam
Location: 66255 - 67685 (-)
Type: pfam
Location: 66255 - 67685 (-)
Gene ID: Rep_3508_c_0_60
Type: CAZyme
Location: 67983 - 71042 (-)
Type: CAZyme
Location: 67983 - 71042 (-)
Gene ID: Rep_3508_c_0_61
Type: TC
Location: 71063 - 71680 (-)
Type: TC
Location: 71063 - 71680 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp902489595
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3508_c_0_59 | vegan > omnivore | 1.57793 | 0.03762 |
| Rep_3508_c_0_59 | vegetarian > omnivore | 1.96338 | 0.02132 |