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Cluster: Rep_3508_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3508_c_62 Rep_3508_c_62_2 846 1499 + 9.B.18.1.3
CAZyme Rep_3508_c_62 Rep_3508_c_62_3 1512 2648 + GT4
CAZyme Rep_3508_c_62 Rep_3508_c_62_4 2660 3727 + GT4
pfam Rep_3508_c_62 Rep_3508_c_62_5 3737 4621 + GINT1_N
pfam Rep_3508_c_62 Rep_3508_c_62_6 4629 5570 + DUF6625
CAZyme Rep_3508_c_62 Rep_3508_c_62_7 5574 6554 + GT2
CAZyme Rep_3508_c_62 Rep_3508_c_62_8 6558 7670 + GT4
pfam Rep_3508_c_62 Rep_3508_c_62_9 7692 8924 + EpsG
CAZyme Rep_3508_c_62 Rep_3508_c_62_10 8938 9954 + GT2
CAZyme Rep_3508_c_62 Rep_3508_c_62_11 9951 10847 + GT2
Gene ID: Rep_3508_c_62_2
Type: TC
Location: 846 - 1499 (+)
Gene ID: Rep_3508_c_62_3
Type: CAZyme
Location: 1512 - 2648 (+)
Gene ID: Rep_3508_c_62_4
Type: CAZyme
Location: 2660 - 3727 (+)
Gene ID: Rep_3508_c_62_5
Type: pfam
Location: 3737 - 4621 (+)
Gene ID: Rep_3508_c_62_6
Type: pfam
Location: 4629 - 5570 (+)
Gene ID: Rep_3508_c_62_7
Type: CAZyme
Location: 5574 - 6554 (+)
Gene ID: Rep_3508_c_62_8
Type: CAZyme
Location: 6558 - 7670 (+)
Gene ID: Rep_3508_c_62_9
Type: pfam
Location: 7692 - 8924 (+)
Gene ID: Rep_3508_c_62_10
Type: CAZyme
Location: 8938 - 9954 (+)
Gene ID: Rep_3508_c_62_11
Type: CAZyme
Location: 9951 - 10847 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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