Cluster: Rep_3506_CGC6
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3506
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3506_c_54 | Rep_3506_c_54_1 | 2 | 901 | + | 3.A.1.111.2 |
| TC | Rep_3506_c_54 | Rep_3506_c_54_2 | 891 | 2687 | + | 3.A.1.111.2 |
| pfam | Rep_3506_c_54 | Rep_3506_c_54_3 | 2699 | 3253 | + | tRNA_edit |
| pfam | Rep_3506_c_54 | Rep_3506_c_54_4 | 3309 | 4226 | - | SUFBD_core |
| TC | Rep_3506_c_54 | Rep_3506_c_54_5 | 4252 | 4974 | - | 3.A.1.25.5 |
| CAZyme | Rep_3506_c_54 | Rep_3506_c_54_6 | 5233 | 7503 | + | GH2 |
| TC | Rep_3506_c_54 | Rep_3506_c_54_7 | 7597 | 8520 | - | 8.A.21.2.2 |
| pfam | Rep_3506_c_54 | Rep_3506_c_54_8 | 8543 | 8980 | - | NfeD |
| pfam | Rep_3506_c_54 | Rep_3506_c_54_9 | 9176 | 9946 | - | TauE |
| TC | Rep_3506_c_54 | Rep_3506_c_54_10 | 10103 | 11608 | + | 2.A.2.3.4 |
| NULL(UNKNOWN) | Rep_3506_c_54 | Rep_3506_c_54_11 | 11624 | 12583 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Rep_3506_c_54 | Rep_3506_c_54_12 | 12789 | 13493 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3506_c_54 | Rep_3506_c_54_13 | 13694 | 15409 | - | 3.D.1.5.1 |
| TC | Rep_3506_c_54 | Rep_3506_c_54_14 | 15423 | 17324 | - | 3.D.1.5.1 |
| TC | Rep_3506_c_54 | Rep_3506_c_54_15 | 17321 | 17824 | - | 3.D.1.5.1 |
Gene ID: Rep_3506_c_54_1
Type: TC
Location: 2 - 901 (+)
Type: TC
Location: 2 - 901 (+)
Gene ID: Rep_3506_c_54_2
Type: TC
Location: 891 - 2687 (+)
Type: TC
Location: 891 - 2687 (+)
Gene ID: Rep_3506_c_54_3
Type: pfam
Location: 2699 - 3253 (+)
Type: pfam
Location: 2699 - 3253 (+)
Gene ID: Rep_3506_c_54_4
Type: pfam
Location: 3309 - 4226 (-)
Type: pfam
Location: 3309 - 4226 (-)
Gene ID: Rep_3506_c_54_5
Type: TC
Location: 4252 - 4974 (-)
Type: TC
Location: 4252 - 4974 (-)
Gene ID: Rep_3506_c_54_6
Type: CAZyme
Location: 5233 - 7503 (+)
Type: CAZyme
Location: 5233 - 7503 (+)
Gene ID: Rep_3506_c_54_7
Type: TC
Location: 7597 - 8520 (-)
Type: TC
Location: 7597 - 8520 (-)
Gene ID: Rep_3506_c_54_8
Type: pfam
Location: 8543 - 8980 (-)
Type: pfam
Location: 8543 - 8980 (-)
Gene ID: Rep_3506_c_54_9
Type: pfam
Location: 9176 - 9946 (-)
Type: pfam
Location: 9176 - 9946 (-)
Gene ID: Rep_3506_c_54_10
Type: TC
Location: 10103 - 11608 (+)
Type: TC
Location: 10103 - 11608 (+)
Gene ID: Rep_3506_c_54_11
Type:
Location: 11624 - 12583 (+)
Type:
Location: 11624 - 12583 (+)
Gene ID: Rep_3506_c_54_12
Type:
Location: 12789 - 13493 (+)
Type:
Location: 12789 - 13493 (+)
Gene ID: Rep_3506_c_54_13
Type: TC
Location: 13694 - 15409 (-)
Type: TC
Location: 13694 - 15409 (-)
Gene ID: Rep_3506_c_54_14
Type: TC
Location: 15423 - 17324 (-)
Type: TC
Location: 15423 - 17324 (-)
Gene ID: Rep_3506_c_54_15
Type: TC
Location: 17321 - 17824 (-)
Type: TC
Location: 17321 - 17824 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.