Cluster: Rep_3506_CGC21
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_3506
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3506_c_148 | Rep_3506_c_148_10 | 5635 | 7116 | + | 2.A.2.2.3 |
| pfam | Rep_3506_c_148 | Rep_3506_c_148_11 | 7345 | 7896 | - | ECF-ribofla_trS | ECF_trnsprt |
| TC | Rep_3506_c_148 | Rep_3506_c_148_12 | 8095 | 8925 | + | 3.A.1.26.7 |
| TC | Rep_3506_c_148 | Rep_3506_c_148_13 | 8910 | 9767 | + | 3.A.1.25.6 |
| TC | Rep_3506_c_148 | Rep_3506_c_148_14 | 9764 | 10555 | + | 3.A.1.26.10 |
| pfam | Rep_3506_c_148 | Rep_3506_c_148_15 | 10569 | 11153 | + | RrnaAD | PCMT | Ubie_methyltran | CMAS | MTS | Methyltransf_11 | Methyltransf_12 | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| CAZyme | Rep_3506_c_148 | Rep_3506_c_148_16 | 11348 | 12754 | - | GH18 |
| pfam | Rep_3506_c_148 | Rep_3506_c_148_17 | 12800 | 14899 | - | Metallophos | PQQ_2 | PQQ_2 | Beta-prop_ACSF4 | MetallophosN |
| CAZyme | Rep_3506_c_148 | Rep_3506_c_148_18 | 15040 | 16083 | - | GH16 |
| pfam | Rep_3506_c_148 | Rep_3506_c_148_19 | 16088 | 17557 | - | Metallophos |
| CAZyme | Rep_3506_c_148 | Rep_3506_c_148_20 | 17592 | 18944 | - | GH29 |
| CAZyme | Rep_3506_c_148 | Rep_3506_c_148_21 | 18955 | 20430 | - | GH29 |
Gene ID: Rep_3506_c_148_10
Type: TC
Location: 5635 - 7116 (+)
Type: TC
Location: 5635 - 7116 (+)
Gene ID: Rep_3506_c_148_11
Type: pfam
Location: 7345 - 7896 (-)
Type: pfam
Location: 7345 - 7896 (-)
Gene ID: Rep_3506_c_148_12
Type: TC
Location: 8095 - 8925 (+)
Type: TC
Location: 8095 - 8925 (+)
Gene ID: Rep_3506_c_148_13
Type: TC
Location: 8910 - 9767 (+)
Type: TC
Location: 8910 - 9767 (+)
Gene ID: Rep_3506_c_148_14
Type: TC
Location: 9764 - 10555 (+)
Type: TC
Location: 9764 - 10555 (+)
Gene ID: Rep_3506_c_148_15
Type: pfam
Location: 10569 - 11153 (+)
Type: pfam
Location: 10569 - 11153 (+)
Gene ID: Rep_3506_c_148_16
Type: CAZyme
Location: 11348 - 12754 (-)
Type: CAZyme
Location: 11348 - 12754 (-)
Gene ID: Rep_3506_c_148_17
Type: pfam
Location: 12800 - 14899 (-)
Type: pfam
Location: 12800 - 14899 (-)
Gene ID: Rep_3506_c_148_18
Type: CAZyme
Location: 15040 - 16083 (-)
Type: CAZyme
Location: 15040 - 16083 (-)
Gene ID: Rep_3506_c_148_19
Type: pfam
Location: 16088 - 17557 (-)
Type: pfam
Location: 16088 - 17557 (-)
Gene ID: Rep_3506_c_148_20
Type: CAZyme
Location: 17592 - 18944 (-)
Type: CAZyme
Location: 17592 - 18944 (-)
Gene ID: Rep_3506_c_148_21
Type: CAZyme
Location: 18955 - 20430 (-)
Type: CAZyme
Location: 18955 - 20430 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.