Cluster: Rep_3505_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3505
- CGC Family ID: CGCFAM_00271
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3505_c_0 | Rep_3505_c_0_241 | 228404 | 229042 | - | 9.A.11.1.1 |
| NULL(UNKNOWN) | Rep_3505_c_0 | Rep_3505_c_0_242 | 229123 | 231171 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_243 | 231272 | 233131 | - | GH13_39 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_244 | 233194 | 233706 | - | Phosphorylase |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_245 | 233690 | 235699 | - | GT35 |
Gene ID: Rep_3505_c_0_241
Type: TC
Location: 228404 - 229042 (-)
Type: TC
Location: 228404 - 229042 (-)
Gene ID: Rep_3505_c_0_242
Type:
Location: 229123 - 231171 (-)
Type:
Location: 229123 - 231171 (-)
Gene ID: Rep_3505_c_0_243
Type: CAZyme
Location: 231272 - 233131 (-)
Type: CAZyme
Location: 231272 - 233131 (-)
Gene ID: Rep_3505_c_0_244
Type: pfam
Location: 233194 - 233706 (-)
Type: pfam
Location: 233194 - 233706 (-)
Gene ID: Rep_3505_c_0_245
Type: CAZyme
Location: 233690 - 235699 (-)
Type: CAZyme
Location: 233690 - 235699 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3505_c_0_245 | vegetarian > omnivore | 1.01493 | 0.00341 |