Cluster: Rep_3505_CGC14
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3505
- CGC Family ID: CGCFAM_04119
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3505_c_0 | Rep_3505_c_0_1218 | 1162529 | 1164019 | - | 2.A.2.1.1 |
| peptidase | Rep_3505_c_0 | Rep_3505_c_0_1219 | 1164049 | 1164795 | - | S26.UPA |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_1220 | 1164796 | 1167141 | - | GH36 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_1221 | 1167157 | 1167411 | - | TSCPD |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_1222 | 1167626 | 1168639 | + | GH179 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_1223 | 1168642 | 1170495 | + | TPP_enzyme_M | CO_dh | TPP_enzyme_C | TPP_enzyme_N |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_1224 | 1170657 | 1171556 | + | AP_endonuc_2 |
| TC | Rep_3505_c_0 | Rep_3505_c_0_1225 | 1171683 | 1172834 | - | 2.A.86.1.3 |
Gene ID: Rep_3505_c_0_1218
Type: TC
Location: 1162529 - 1164019 (-)
Type: TC
Location: 1162529 - 1164019 (-)
Gene ID: Rep_3505_c_0_1219
Type: peptidase
Location: 1164049 - 1164795 (-)
Type: peptidase
Location: 1164049 - 1164795 (-)
Gene ID: Rep_3505_c_0_1220
Type: CAZyme
Location: 1164796 - 1167141 (-)
Type: CAZyme
Location: 1164796 - 1167141 (-)
Gene ID: Rep_3505_c_0_1221
Type: pfam
Location: 1167157 - 1167411 (-)
Type: pfam
Location: 1167157 - 1167411 (-)
Gene ID: Rep_3505_c_0_1222
Type: CAZyme
Location: 1167626 - 1168639 (+)
Type: CAZyme
Location: 1167626 - 1168639 (+)
Gene ID: Rep_3505_c_0_1223
Type: pfam
Location: 1168642 - 1170495 (+)
Type: pfam
Location: 1168642 - 1170495 (+)
Gene ID: Rep_3505_c_0_1224
Type: pfam
Location: 1170657 - 1171556 (+)
Type: pfam
Location: 1170657 - 1171556 (+)
Gene ID: Rep_3505_c_0_1225
Type: TC
Location: 1171683 - 1172834 (-)
Type: TC
Location: 1171683 - 1172834 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3505_c_0_1222 | vegetarian > omnivore | 2.21734 | 0.00341 |
| Rep_3505_c_0_1222 | vegetarian > vegan | 1.47820 | 0.02321 |