Cluster: Rep_3505_CGC10
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_3505
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3505_c_0 | Rep_3505_c_0_1006 | 931434 | 932243 | - | 3.A.1.34.1 |
| TC | Rep_3505_c_0 | Rep_3505_c_0_1007 | 932243 | 933181 | - | 3.A.1.34.1 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_1008 | 933297 | 934304 | - | ABC_sub_bind |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_1009 | 934472 | 935422 | - | Ldh_1_N | Ldh_1_C |
| TC | Rep_3505_c_0 | Rep_3505_c_0_1010 | 935609 | 936325 | + | 3.A.1.122.14 |
| NULL(UNKNOWN) | Rep_3505_c_0 | Rep_3505_c_0_1011 | 936312 | 937676 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3505_c_0 | Rep_3505_c_0_1012 | 937663 | 939003 | + | 3.A.1.122.2 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_1013 | 939274 | 939657 | + | PIN7 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_1014 | 939701 | 940675 | - | DAHP_synth_1 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_1015 | 941021 | 941818 | + | GH25 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_1016 | 941845 | 943656 | + | GH25 |
| TC | Rep_3505_c_0 | Rep_3505_c_0_1017 | 943701 | 944444 | - | 3.A.1.17.8 |
| TC | Rep_3505_c_0 | Rep_3505_c_0_1018 | 944449 | 945471 | - | 3.A.1.17.8 |
| TC | Rep_3505_c_0 | Rep_3505_c_0_1019 | 945461 | 946249 | - | 3.A.1.17.8 |
Gene ID: Rep_3505_c_0_1006
Type: TC
Location: 931434 - 932243 (-)
Type: TC
Location: 931434 - 932243 (-)
Gene ID: Rep_3505_c_0_1007
Type: TC
Location: 932243 - 933181 (-)
Type: TC
Location: 932243 - 933181 (-)
Gene ID: Rep_3505_c_0_1008
Type: pfam
Location: 933297 - 934304 (-)
Type: pfam
Location: 933297 - 934304 (-)
Gene ID: Rep_3505_c_0_1009
Type: pfam
Location: 934472 - 935422 (-)
Type: pfam
Location: 934472 - 935422 (-)
Gene ID: Rep_3505_c_0_1010
Type: TC
Location: 935609 - 936325 (+)
Type: TC
Location: 935609 - 936325 (+)
Gene ID: Rep_3505_c_0_1011
Type:
Location: 936312 - 937676 (+)
Type:
Location: 936312 - 937676 (+)
Gene ID: Rep_3505_c_0_1012
Type: TC
Location: 937663 - 939003 (+)
Type: TC
Location: 937663 - 939003 (+)
Gene ID: Rep_3505_c_0_1013
Type: pfam
Location: 939274 - 939657 (+)
Type: pfam
Location: 939274 - 939657 (+)
Gene ID: Rep_3505_c_0_1014
Type: pfam
Location: 939701 - 940675 (-)
Type: pfam
Location: 939701 - 940675 (-)
Gene ID: Rep_3505_c_0_1015
Type: CAZyme
Location: 941021 - 941818 (+)
Type: CAZyme
Location: 941021 - 941818 (+)
Gene ID: Rep_3505_c_0_1016
Type: CAZyme
Location: 941845 - 943656 (+)
Type: CAZyme
Location: 941845 - 943656 (+)
Gene ID: Rep_3505_c_0_1017
Type: TC
Location: 943701 - 944444 (-)
Type: TC
Location: 943701 - 944444 (-)
Gene ID: Rep_3505_c_0_1018
Type: TC
Location: 944449 - 945471 (-)
Type: TC
Location: 944449 - 945471 (-)
Gene ID: Rep_3505_c_0_1019
Type: TC
Location: 945461 - 946249 (-)
Type: TC
Location: 945461 - 946249 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.