Cluster: Rep_3505_CGC1
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 10
- Substrate:
- Genome ID: Rep_3505
- CGC Family ID: CGCFAM_10808
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3505_c_0 | Rep_3505_c_0_105 | 103017 | 103706 | - | 2.A.66.1.40 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_106 | 103785 | 104342 | - | PS_pyruv_trans |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_107 | 104323 | 104760 | - | PS_pyruv_trans |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_108 | 104785 | 105804 | - | GT2 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_109 | 105818 | 106774 | - | GT2 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_110 | 106793 | 107776 | - | GT2 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_111 | 107780 | 108769 | - | GT2 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_112 | 108769 | 109782 | - | GT2 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_113 | 109784 | 110911 | - | GT4 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_114 | 110916 | 111902 | - | GT2 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_115 | 111913 | 112860 | - | GT2 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_116 | 112873 | 114057 | - | EpsG |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_117 | 114083 | 114775 | - | GT4 |
| CAZyme | Rep_3505_c_0 | Rep_3505_c_0_118 | 115158 | 116294 | - | GT4 |
| TC | Rep_3505_c_0 | Rep_3505_c_0_119 | 116309 | 116959 | - | 9.B.18.1.3 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_120 | 116952 | 117776 | - | HpcH_HpaI |
| TC | Rep_3505_c_0 | Rep_3505_c_0_121 | 118055 | 119377 | + | 2.A.22.5.3 |
| pfam | Rep_3505_c_0 | Rep_3505_c_0_122 | 119555 | 120904 | + | ELFV_dehydrog | ELFV_dehydrog_N |
| TC | Rep_3505_c_0 | Rep_3505_c_0_123 | 121220 | 121930 | + | 2.A.79.1.4 |
Gene ID: Rep_3505_c_0_105
Type: TC
Location: 103017 - 103706 (-)
Type: TC
Location: 103017 - 103706 (-)
Gene ID: Rep_3505_c_0_106
Type: pfam
Location: 103785 - 104342 (-)
Type: pfam
Location: 103785 - 104342 (-)
Gene ID: Rep_3505_c_0_107
Type: pfam
Location: 104323 - 104760 (-)
Type: pfam
Location: 104323 - 104760 (-)
Gene ID: Rep_3505_c_0_108
Type: CAZyme
Location: 104785 - 105804 (-)
Type: CAZyme
Location: 104785 - 105804 (-)
Gene ID: Rep_3505_c_0_109
Type: CAZyme
Location: 105818 - 106774 (-)
Type: CAZyme
Location: 105818 - 106774 (-)
Gene ID: Rep_3505_c_0_110
Type: CAZyme
Location: 106793 - 107776 (-)
Type: CAZyme
Location: 106793 - 107776 (-)
Gene ID: Rep_3505_c_0_111
Type: CAZyme
Location: 107780 - 108769 (-)
Type: CAZyme
Location: 107780 - 108769 (-)
Gene ID: Rep_3505_c_0_112
Type: CAZyme
Location: 108769 - 109782 (-)
Type: CAZyme
Location: 108769 - 109782 (-)
Gene ID: Rep_3505_c_0_113
Type: CAZyme
Location: 109784 - 110911 (-)
Type: CAZyme
Location: 109784 - 110911 (-)
Gene ID: Rep_3505_c_0_114
Type: CAZyme
Location: 110916 - 111902 (-)
Type: CAZyme
Location: 110916 - 111902 (-)
Gene ID: Rep_3505_c_0_115
Type: CAZyme
Location: 111913 - 112860 (-)
Type: CAZyme
Location: 111913 - 112860 (-)
Gene ID: Rep_3505_c_0_116
Type: pfam
Location: 112873 - 114057 (-)
Type: pfam
Location: 112873 - 114057 (-)
Gene ID: Rep_3505_c_0_117
Type: CAZyme
Location: 114083 - 114775 (-)
Type: CAZyme
Location: 114083 - 114775 (-)
Gene ID: Rep_3505_c_0_118
Type: CAZyme
Location: 115158 - 116294 (-)
Type: CAZyme
Location: 115158 - 116294 (-)
Gene ID: Rep_3505_c_0_119
Type: TC
Location: 116309 - 116959 (-)
Type: TC
Location: 116309 - 116959 (-)
Gene ID: Rep_3505_c_0_120
Type: pfam
Location: 116952 - 117776 (-)
Type: pfam
Location: 116952 - 117776 (-)
Gene ID: Rep_3505_c_0_121
Type: TC
Location: 118055 - 119377 (+)
Type: TC
Location: 118055 - 119377 (+)
Gene ID: Rep_3505_c_0_122
Type: pfam
Location: 119555 - 120904 (+)
Type: pfam
Location: 119555 - 120904 (+)
Gene ID: Rep_3505_c_0_123
Type: TC
Location: 121220 - 121930 (+)
Type: TC
Location: 121220 - 121930 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.