Cluster: Rep_3502_CGC36
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3502
- CGC Family ID: CGCFAM_00504
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3502_c_32 | Rep_3502_c_32_89 | 87832 | 88515 | - | 3.A.1.122.14 |
| STP | Rep_3502_c_32 | Rep_3502_c_32_90 | 88593 | 89585 | - | HATPase_c | HisKA |
| TF | Rep_3502_c_32 | Rep_3502_c_32_91 | 89578 | 90255 | - | Trans_reg_C |
| CAZyme | Rep_3502_c_32 | Rep_3502_c_32_92 | 90357 | 91829 | - | GH29 |
| NULL(UNKNOWN) | Rep_3502_c_32 | Rep_3502_c_32_93 | 91826 | 92419 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3502_c_32 | Rep_3502_c_32_94 | 92412 | 93869 | - | 2.A.2.1.1 |
Gene ID: Rep_3502_c_32_89
Type: TC
Location: 87832 - 88515 (-)
Type: TC
Location: 87832 - 88515 (-)
Gene ID: Rep_3502_c_32_90
Type: STP
Location: 88593 - 89585 (-)
Type: STP
Location: 88593 - 89585 (-)
Gene ID: Rep_3502_c_32_91
Type: TF
Location: 89578 - 90255 (-)
Type: TF
Location: 89578 - 90255 (-)
Gene ID: Rep_3502_c_32_92
Type: CAZyme
Location: 90357 - 91829 (-)
Type: CAZyme
Location: 90357 - 91829 (-)
Gene ID: Rep_3502_c_32_93
Type:
Location: 91826 - 92419 (-)
Type:
Location: 91826 - 92419 (-)
Gene ID: Rep_3502_c_32_94
Type: TC
Location: 92412 - 93869 (-)
Type: TC
Location: 92412 - 93869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp944385025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3502_c_32_89 | vegan > omnivore | 1.18998 | 0.04808 |
| Rep_3502_c_32_89 | vegetarian > omnivore | 1.89197 | 0.01416 |