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Cluster: Rep_3502_CGC26

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_3502_c_25 Rep_3502_c_25_73 79799 80863 - 3.A.1.2.1
TC Rep_3502_c_25 Rep_3502_c_25_74 80863 82356 - 3.A.1.2.20
pfam Rep_3502_c_25 Rep_3502_c_25_75 82448 83533 - Peripla_BP_4
pfam Rep_3502_c_25 Rep_3502_c_25_76 83585 84499 - AP_endonuc_2
CAZyme Rep_3502_c_25 Rep_3502_c_25_77 84507 85553 - GH179
TF Rep_3502_c_25 Rep_3502_c_25_78 85809 86828 + LacI
pfam Rep_3502_c_25 Rep_3502_c_25_79 87222 87767 + YcxB
TC Rep_3502_c_25 Rep_3502_c_25_80 87955 89304 - 3.A.1.122.2
pfam Rep_3502_c_25 Rep_3502_c_25_81 89282 90634 - CARDB
TC Rep_3502_c_25 Rep_3502_c_25_82 90651 91334 - 3.A.1.122.14
Gene ID: Rep_3502_c_25_73
Type: TC
Location: 79799 - 80863 (-)
Gene ID: Rep_3502_c_25_74
Type: TC
Location: 80863 - 82356 (-)
Gene ID: Rep_3502_c_25_75
Type: pfam
Location: 82448 - 83533 (-)
Gene ID: Rep_3502_c_25_76
Type: pfam
Location: 83585 - 84499 (-)
Gene ID: Rep_3502_c_25_77
Type: CAZyme
Location: 84507 - 85553 (-)
Gene ID: Rep_3502_c_25_78
Type: TF
Location: 85809 - 86828 (+)
Gene ID: Rep_3502_c_25_79
Type: pfam
Location: 87222 - 87767 (+)
Gene ID: Rep_3502_c_25_80
Type: TC
Location: 87955 - 89304 (-)
Gene ID: Rep_3502_c_25_81
Type: pfam
Location: 89282 - 90634 (-)
Gene ID: Rep_3502_c_25_82
Type: TC
Location: 90651 - 91334 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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