Cluster: Rep_3502_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_3502
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_3502_c_25 | Rep_3502_c_25_51 | 53617 | 54894 | - | 9.A.40.2.2 |
| pfam | Rep_3502_c_25 | Rep_3502_c_25_52 | 54980 | 56422 | - | Radical_SAM |
| CAZyme | Rep_3502_c_25 | Rep_3502_c_25_53 | 56551 | 59610 | - | GH2 |
| TC | Rep_3502_c_25 | Rep_3502_c_25_54 | 59634 | 60251 | - | 9.B.18.1.2 |
| NULL(UNKNOWN) | Rep_3502_c_25 | Rep_3502_c_25_55 | 60414 | 61043 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_3502_c_25 | Rep_3502_c_25_56 | 61116 | 63863 | + | 3.A.5.1.3 |
Gene ID: Rep_3502_c_25_51
Type: TC
Location: 53617 - 54894 (-)
Type: TC
Location: 53617 - 54894 (-)
Gene ID: Rep_3502_c_25_52
Type: pfam
Location: 54980 - 56422 (-)
Type: pfam
Location: 54980 - 56422 (-)
Gene ID: Rep_3502_c_25_53
Type: CAZyme
Location: 56551 - 59610 (-)
Type: CAZyme
Location: 56551 - 59610 (-)
Gene ID: Rep_3502_c_25_54
Type: TC
Location: 59634 - 60251 (-)
Type: TC
Location: 59634 - 60251 (-)
Gene ID: Rep_3502_c_25_55
Type:
Location: 60414 - 61043 (+)
Type:
Location: 60414 - 61043 (+)
Gene ID: Rep_3502_c_25_56
Type: TC
Location: 61116 - 63863 (+)
Type: TC
Location: 61116 - 63863 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Eubacterium_R
Species
Eubacterium_R sp944385025
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_3502_c_25_52 | vegan > omnivore | 1.03867 | 0.04808 |